Pseudomonas cannabina pv. alisalensis: JGS08_09305
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Entry
JGS08_09305 CDS
T07379
Name
(GenBank) AAA family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_09305
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JGS08_09305
Archaeal homologous recombinant proteins
JGS08_09305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
SMC_N
RNase_3_N
ABC_tran
MMR_HSR1
DUF2563
nSTAND3
AAA_22
RsgA_GTPase
DUF7386
Motif
Other DBs
NCBI-ProteinID:
QQN23784
LinkDB
All DBs
Position
complement(2019539..2023183)
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPFELDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR
LSNIGQSKVPDIDGDISTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWETNRARDNAT
KKLQASRQILTDLDSEQILSNQSKREFEQLVESRLGLNFEQFTRAVMLAQSEFSAFLKAD
DKERSELLEKLTNTAIYSQLGRRAYSKSKEAEEALKTLTAQASHIVPLAPEQLAELEQRF
NDAQQQLKARQAQQRQLELKQQWLIELHRLRDERLAAQESLTRAQQTWDEQSLQRQTLAQ
LERLGPQRHRFTRKATLIAQLTPLAEQISQHQRQQTSLQNQQQQLETRRTEAQASLLTAQ
QAHGSAKPLLQQAFDAQNTLNHLAEELTKATDLHQQTGQLCTQGQASLQSLLDQQQQVAQ
RLERIAEQLQHSSELAPLAQAWSAWRDRLKSLTLIANRLKHGQQELPALQQRASEADQQL
TEQRNALELLYREADCEVEAVTEQVQILGSLLQDNRKQQRAFEGLTRLWASQQDVDRQLA
DLAQQQQSAQQQRDQLNSEGIRVRDELAVAEQTLSVTRQLLERQRLARSASVEELRVQLQ
DDQPCPVCGSVEHPWHQPEALLESLTRHDDNEQASAQKAVDLLTEQRNQLREQVGGVIAR
QKELLRQHDQLIQRHQALAPNLEAHPLAAQLLDRDADKRDAWLSQQLSQLNDVIARDEQR
QEALLTLQKDAARLQQQLQTATETSQTATRHVADQLKQLEADQQRLEEELAAFKPLVSPQ
VLEGLRNDASATVMQLEQQVTQRLDQLEQQSEEQQEQRERQQKIEKEQIEQQARLQRQTE
LALEVTRLGEQQQARQQVLADLLGEHATAEQWQQALENAIEQARQNETSATQTLQATQRQ
LIQLAAELKSGQQQQQALQDERTELEVQISEWRGQHPELDDAALDTLLAYDDAHVEQLRQ
QLHAAEKALEQDKVLLQERDQRLQQHQAQHSDLSDDQQLSTELQQAQEHLAQSEQQCADL
RAELSEDQRRRTANSELQTRISEANSEYVRWARLAALIGSAEGDRFRKIAQAYNLDLLVH
HANAQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGVISHVQEMHERIPVQIRV
RRQGNGLSTIEVGS
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctggccattcgcctgaaaaacctcgcctcgctggcaggcccgttcgaactg
gattttaccgctgagccgctggccagcgccgggctgttcgccattaccggcccgaccggc
gcgggtaaaagtaccttgctcgacgccttgtgtctggcgctgttcggcgcgattccgcga
ctgagcaatatcggccagtccaaggtgccggacatcgacggtgacatctccaccagcgac
ccgcgcaccctgctgcgacgcggcaccggcagtggttacgccgaggtggatttcatcggt
atcgaccagcgccgttatcgtgcgcgctgggaaaccaatcgcgcgcgcgacaatgccact
aaaaagctccaggccagccgccagattctcaccgacctggacagcgagcagatcctcagc
aaccagagcaagcgtgaattcgaacaactggtcgaaagccgtctgggcctgaacttcgaa
cagttcacccgcgccgtgatgctcgcccagagcgagttcagcgccttcctcaaggcggat
gacaaggaacgcagcgagctgctggaaaagctgaccaacaccgcgatctacagccagctc
ggtcggcgcgcctacagcaagagcaaagaagctgaagaagcactgaaaaccctgactgcg
caggccagtcatatcgtcccgctggccccggaacaactggccgaacttgaacaacgcttc
aatgatgctcagcagcagctcaaagcccgtcaggcacaacaacggcaactggagctcaag
cagcaatggctgatcgagctgcaccgcctgcgtgacgaacgacttgcggctcaggaaagc
ctgacccgtgcgcagcagacctgggacgagcagagccttcagcggcagacgcttgcgcaa
ttggaacgccttggcccgcagcgccatcgctttacccgcaaggccacgctgattgcccag
ctcaccccgctggccgagcaaatcagccaacaccagcgacagcagacatcgttgcagaac
cagcagcaacaactggaaacccgccgcacagaggcgcaagccagcctgttgacggcccag
caagcgcacggcagcgcaaagccgctgttgcagcaggcgtttgacgcgcagaacaccctg
aaccatctggccgaggagctaaccaaagccaccgatctgcatcagcagaccgggcagctg
tgcactcagggccaggccagcctgcaatccttgctcgaccagcagcaacaggttgcgcaa
cgccttgaacgtatcgccgaacaactgcaacacagcagcgaactggccccgctggcccag
gcgtggagcgcgtggcgtgaccgtttgaaatcactgaccctgatcgccaaccggctcaaa
catgggcagcaggaactgcctgccctgcaacagcgcgccagcgaagccgatcaacaactg
accgagcagcgcaacgcactggaattgctctaccgggaagccgattgcgaagtcgaagcg
gtgaccgagcaggtgcagattctcggcagcctgctgcaggacaatcgcaagcaacagcgc
gcattcgaagggctgacccgcctgtgggccagccagcaggacgtcgaccgccagctcgct
gatctggcgcagcaacagcaaagcgcccagcagcaacgcgaccagctcaacagcgaaggt
atccgcgttcgcgacgaactggccgtcgccgagcagaccctgagcgtcacccggcaactc
ttggaacgtcagcgtctggcgcgcagtgccagtgtcgaagaactgcgcgtgcagttgcag
gatgaccagccctgcccggtgtgcggcagcgtcgaacacccctggcatcagccggaagcg
ctgctggaaagcctcactcggcacgacgacaacgagcaggccagcgcgcagaaggctgtg
gacctgctgaccgagcagcgcaatcagttgcgtgaacaggtcggcggcgtgatcgcccgg
cagaaagaactgctgcgccagcacgatcagctgattcagcgtcaccaggccttggcacct
aaccttgaagctcatccgctcgccgctcaattgctggaccgcgatgcagacaagcgtgac
gcctggctgagccagcagttgagccagttgaacgacgtcatcgcccgcgacgagcaacgc
caagaggccttgctgaccctgcagaaagacgcggctcgcttgcagcagcagctccagact
gcaaccgaaaccagccagaccgccacgcgccacgtagccgaccagctcaagcaactggaa
gccgatcagcagcggctggaagaagaactggctgcattcaagccgctggtttcaccgcag
gtgctcgaaggcctgcgcaacgacgcatcggctacggtcatgcagctcgagcagcaagtg
acgcagcggctggaccaactggagcagcaaagcgaagagcagcaggaacagcgcgaacgc
cagcagaagatcgagaaggaacagatcgaacagcaagcccgcctgcaacgccagaccgaa
ctggcccttgaagtcacccggctcggcgagcaacaacaagcccgccagcaagtactggcg
gacctgctgggcgagcatgccacagccgagcaatggcaacaggcgctggaaaatgccatc
gagcaggcccgtcagaacgagacatcggcaacgcagacgcttcaggccactcaacgtcag
ttgattcagctggctgccgagctcaaatccggccagcaacagcaacaagcgttgcaggat
gagcggacggaactcgaggtgcagatcagcgagtggcgcgggcagcacccggaactggac
gatgccgcgctcgataccttgctggcttacgatgacgcgcacgtcgagcagctccgccag
caattacacgcagcggaaaaagccctggagcaggacaaagtgttgctgcaggaacgtgat
caacgcctgcaacagcatcaggcgcagcacagcgatctgagcgacgaccaacaactgtcg
accgaactgcaacaggctcaggaacacctggcgcagagcgaacagcagtgtgccgacctg
cgcgcagaactcagcgaagaccaacgccgcaggacggccaacagtgaactgcaaacgcgc
atcagcgaagccaacagcgagtacgtgcgctgggcacgactggcagcgctgatcggctcg
gccgagggcgacaggtttcgcaaaatcgcccaggcctacaacctcgacctgctggtccat
cacgccaacgcacaactcaggcaactggtgcgccgctaccgcctgaaacgcggcggcagc
atgcttggcctgctggtcatggacaccgaaatgggcgacgaactgcgctcggtgcattcg
ctgtcaggcggggaaaccttcctcgtctcgctggccctggcattgggcctggcgtcgatg
gcctccagcaccttgcgcatcgaatcgctgttcatcgacgaaggcttcggcagtctcgat
ccggaatcgttgcaactggcgatggacgccctggacggtttgcaggcacagggccgcaaa
gtcggcgtgatctcccacgtacaggaaatgcacgaacggattccggtgcaaatcagagtg
cgtcgacagggcaacgggttgagcacaatagaagtgggtagctga
DBGET
integrated database retrieval system
