Pseudomonas cannabina pv. alisalensis: JGS08_10465
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Entry
JGS08_10465 CDS
T07379
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcab03032
]
JGS08_10465 (topA)
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_10465 (topA)
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JGS08_10465 (topA)
DNA replication proteins [BR:
pcab03032
]
Prokaryotic type
DNA Topoisomerases
JGS08_10465 (topA)
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JGS08_10465 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
YubG_C
Motif
Other DBs
NCBI-ProteinID:
QQN23994
LinkDB
All DBs
Position
2295742..2298354
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKDPAAKRGKAAAGE
GPVLTPKEKAQRQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRKLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSRPGELDIARVNAQQARRFLDR
VVGYMVSPLLWQKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAN
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAASMARDYIETEFGKKYLPEAAN
VYSSKEGAQEAHEAIRPSDVNTHPSKLTGMERDAERLYELIWRQFVACQMLPAQYLSTTV
TVAASDFELRAKGRILKFDGYTRALPQMAKPGDDDVLPDMAQGEVLKLNKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTGRLSES
FSNLMDYGFTAGMEENLDDVAKGQRDWKNVLDEFYGDFRKKLEVAEAPDSGMRANQPVMT
DIPCKVCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLTPGDEIADDDEGESESRVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCTGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNAECKNTRKLLKSGDAAPPKMDPVKMPELKCDKVDDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIAPHKDEIDPKYHFLCEAPKKDPDGRPTVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGGAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggctaaggccaagaccatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggcgagtgctgccaaagatcctgccgccaagcgtggcaaggccgctgcgggcgaa
ggcccggtattgacgccgaaagaaaaggcgcagcgccagttggtctcgcgcatgggcgtc
gatccggaccacggctggaaagccaaatacgagatccttcccggcaaggaaaaggtcatc
gaagagctgcgcaagctcgccaaagatgccgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccattggtggcgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaagccatccaggaagcgttttccagg
ccgggcgagctggacatagcgcgggtgaatgctcagcaggcgcgtcgcttcctcgaccgt
gtcgtcggttacatggtgtcgccgctgctctggcagaaagtcgctcgtggtctgtccgcc
ggacgtgtgcaatcggtcgcggtgaagctggtggtcgagcgcgaacgcgaaattcgtgcc
ttcaaccccgaggaatactgggaaattcatgccgacctgggcactgccaaaggtgccaac
gtgcgctttgaagtggcccgcgagaaaggtgaagcgttcaagccgttgaacgaggcccag
gccatggcggccctggaaaagctcaaggcatccagctacagcatcgtcaagcgtgaagac
aagccgaccagcagcaaaccgtcggcaccgttcatcacctcgacgctgcaacaggctgcc
agcaatcgtctgggcttcggcgtgaaaaagaccatgatgatggctcagcgcttgtacgag
gcgggctacatcacttacatgcgtaccgactccaccaacctgtcggccgatgccgccagt
atggcgcgcgactacatcgaaaccgagttcggcaagaagtacctgccggaagcagcgaat
gtctacagcagcaaggaaggcgcgcaggaggcgcacgaagcgattcgtccgtccgacgtc
aacacccatccttcgaagctgaccgggatggagcgtgacgccgagcgtctttacgaactc
atctggcgtcagttcgtggcctgccagatgttgccggcgcaatacctgtcgaccaccgtt
accgttgccgccagcgatttcgagctgcgcgccaagggccgtattctgaagttcgacggt
tacacccgtgcgctgccgcaaatggccaagcccggtgatgacgacgtgctgccggacatg
gcgcagggcgaagtcctcaagctgaacaagctcgacccgagtcaacacttcaccaagccg
cctgcgcgttactcggaagcgagcctggtcaaggaaatggaaaaacgcgggatcggtcgc
ccgtcgacctatgcagcgatcatttcgaccattcaggaccgtggctacgtagcgttgcac
aaccgtcgcttctactcggaaaagatgggcgacatcgtcaccgggcgcctgtctgaaagt
ttttccaacctgatggactatggctttaccgccggcatggaagaaaacctcgacgacgtg
gccaaggggcagcgcgactggaagaacgtgctcgacgagttctacggtgatttccgcaag
aagctggaagtcgccgaagcaccggacagcggcatgcgtgccaaccagccggtgatgacc
gatatcccgtgcaaggtctgtggtcggccgatgcaaatccgcacggcctcgactggcgtg
ttccttggctgttccggttacagcctgccacccaaggagcgctgcaaggcgaccgtcaac
ctgacgcctggcgacgagattgccgacgatgatgagggtgagtccgagtcgcgtgtactg
cgcggcaagcatcgctgcccgatctgcagcacggcgatggacgcttatctgctcgacgag
aagcacaagctgcatatctgcggtaacaacccggattgcaccggctacgagattgaggaa
gggacttatcgcatcaagggctatgaaggcccgagcctcgagtgtgacaagtgcggcagc
gagatgcagctcaagaccggtcgtttcggcaagttcttcggctgcaccaacgctgagtgc
aagaacacccgcaaactgctgaaaagcggtgatgcggcgccaccgaagatggacccggtg
aaaatgccggagctcaagtgcgacaaggtcgacgatacttacatcctgcgtgatggtgct
tcggggctgttcctggctgccagccagttcccgaaaaaccgcgaaacccgtgcaccgctg
gtcatggagatcgcgccgcacaaggatgaaatcgatccgaagtaccacttcctctgcgaa
gcaccgaagaaagacccggacggtcgcccgaccgtcatccgctacagtcgaaagaccaaa
gagcagtacgtccagactgaagtggaaggcaaacctaccggctggcgtgcgttttacgac
ggcggcgcctggaaggtcgaagacaagcgttga
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