Pseudomonas cannabina pv. alisalensis: JGS08_12310
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Entry
JGS08_12310 CDS
T07379
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JGS08_12310
09124 Replication and repair
03420 Nucleotide excision repair
JGS08_12310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcab03021
]
JGS08_12310
03036 Chromosome and associated proteins [BR:
pcab03036
]
JGS08_12310
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_12310
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
JGS08_12310
Transcription machinery [BR:
pcab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JGS08_12310
Chromosome and associated proteins [BR:
pcab03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
JGS08_12310
DNA repair and recombination proteins [BR:
pcab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JGS08_12310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
PilJ
Dynamin_M
Motif
Other DBs
NCBI-ProteinID:
QQN24324
LinkDB
All DBs
Position
2710145..2712469
Genome browser
AA seq
774 aa
AA seq
DB search
MTSQTSVNPDTTPAPASDSPERYVVAVRALCEFTAKVGDLDLRFTPSPTAQEGIAGHRTV
AARRGADYQAELSLTGDYRELTVRGRADGYDAARNQLEEVKTYRGELEAMPANHRQLHWA
QVKVYGWLLCQRLQLEDVTLALVYFNIVSEQETLIREPFSAVALQQFFEQQCAIFLGWAQ
QELAHTQALHATLSTLKFPHPAFRTGQRALAESVYKAASTGCCLMAQAPTGIGKTVGTLF
PLLKAAPGQRLDKIFFLTAKTPGRRLALDALQVINRSAPELRLRVLELVARDKTCEYPDK
ACNGDSCPRAKGFYDRLPAARLAALQSTWLDQASVRYAALLHQVCPYYLSQELARWADVV
IADYNYYFDLSALLFGLGQLNQWRVAVLVDEAHNLVERARQMYSASLDQSQLKALIPTAP
EPVKKALQRVDRQWNALHKAQLAEYQAYSAAPDKFLNSLNLCISTIGDHFNEHPQAVDGT
LQGFYLEAIGFARIAELFDEHFIFDISRREAGGKRVLSRLSLRNVVPARFIRPRLSAARS
SVLFSATLNPRHYYADLLGLPANTAWIDVESPFHHKQLDVRIISRISTRFTHRQASLAPI
VELMAEQFDARPGNYLAFFSSFDYLQQVAGLMARTYPHITLWQQARGMGEAERQAFLDRF
TLSSQGIGFAVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYD
YTYLYPGMQKVVQAAGRVIRSQNDKGVVMLIDDRFAEPKVTQLFPAWWRPETSG
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcccagacttccgtcaatcccgatacgacgccagcccccgccagcgattcgccc
gaacgttatgtggtggcagtgcgcgccttgtgcgagttcacggccaaagtgggcgatctc
gacctgcgcttcacgccatcaccgaccgcccaggaagggatagccgggcatcggactgtc
gcggcgcggcgcggtgccgattatcaggccgaattgtccttgacgggcgactatcgcgaa
ctgaccgtgcgcggcagagcggatggctatgacgcggctcgcaatcagctggaagaagtg
aagacctatcgcggcgagctggaggccatgcccgccaaccaccggcagttgcactgggca
caggtgaaggtctacggctggctgctctgccagcgcctgcaactggaggacgttacgctg
gcgctggtgtatttcaatattgtcagcgagcaggaaaccctgattcgcgagcctttcagc
gccgttgcgctgcaacaattcttcgagcagcaatgcgcgatctttctcggctgggcgcag
caggaactggcgcacactcaggcgttgcacgcgaccctgagcacgctgaaatttccccat
cctgcgttccgcaccgggcaacgcgctctggcggaatcggtttataaggcggccagcacg
ggctgttgcctgatggctcaggcgccaaccggtatcggtaagactgtgggcacgttgttt
ccgttgctcaaagccgcgcccggtcaacgactggacaagattttctttctcacggccaag
acgccgggacgccgtctggcgctggatgcgttgcaggtgatcaatcgcagtgcgcccgaa
ctgaggctgcgggtgctggaactggtggcgcgggacaagacctgcgagtacccggacaag
gcctgcaacggtgattcctgtccgcgggccaaaggtttttacgatcgcctgcccgcagcg
cgcctggctgcactgcaatcgacctggctggatcaggccagcgtgcgctacgcggcgttg
ttgcatcaggtctgtccgtattacctgagccaggagctggcgcgctgggccgacgtggtg
attgccgactacaactattacttcgacctcagcgcgctgttgttcggcctcggccagctc
aatcagtggcgggtggcggtgctggtcgatgaagcgcacaacctggtcgagcgggcgcgc
cagatgtacagcgccagtctcgatcaaagccagctgaaagcgctgatcccgaccgcgcct
gagcccgtgaaaaaagcgctgcagcgtgtcgaccggcaatggaatgcgctgcacaaggcg
caactcgccgagtaccaagcctactcagcggctccggacaaatttctcaatagcctgaac
ctgtgtatttcgacgatcggtgatcatttcaacgaacacccgcaggcagtggacggcacg
ttgcagggcttctatctggaggccatcggttttgcacgcattgccgaactgttcgacgag
cacttcatttttgatatcagccggcgcgaggcgggcggcaagcgtgtgttgtcacggctg
agcctgcgcaatgtggtgcccgcgcgcttcattcgcccacgcctgagcgccgcacgcagc
agtgtgctgttttccgcgacgctcaacccccggcattactacgccgacctgctcgggttg
ccggccaataccgcctggatcgacgttgaatcgccgttccaccacaagcaactggacgtg
cggattatcagccgtatttcaacccgcttcactcatcggcaggcgtcgctggcgccgatt
gtcgagctgatggctgagcagttcgacgccaggccgggtaattatctggcgtttttcagc
agcttcgattacctgcaacaggtggccgggctgatggcgcgcacgtatccgcacattacc
ttgtggcagcaggcgcgaggcatgggcgaagctgaacgccaggcgtttcttgatcgtttt
accctgagcagtcagggcatcggctttgcggtgctgggcggcgcgttcggggaggggatc
gatttgccgggtgcacgcttgatcggcgcgttcatcgcgacgctgggcctgccgcaactc
aacccggtcaacgaacagttcaagcaacgcatggccgcactgttcggcgctggctacgat
tacacctatctgtaccccggcatgcagaaggttgtgcaggcagcgggcagggtgatccgc
agtcagaatgacaagggtgtggtgatgttgatcgacgatcgctttgccgagcccaaggtg
actcagctgtttccggcatggtggcgacctgaaacctccggttag
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integrated database retrieval system
