Pseudomonas cannabina pv. alisalensis: JGS08_12600
Help
Entry
JGS08_12600 CDS
T07379
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcab03032
]
JGS08_12600
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_12600
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JGS08_12600
DNA replication proteins [BR:
pcab03032
]
Prokaryotic type
DNA Topoisomerases
JGS08_12600
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JGS08_12600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QQN24374
LinkDB
All DBs
Position
complement(2777419..2778474)
Genome browser
AA seq
351 aa
AA seq
DB search
MPDSTALSQPASDLHYVDDTQPGFTRKILRGKFAYFDTKGQRIKDESEFKRINALAVPPA
YTDVWICADPMGHLQATGRDARGRKQYRYHPRWREIRDQDKYSRLIEFGHALPKVRRQIE
AQLAQPGMGREKVMATVISLLDATLIRIGNSQYAKENRSYGLTTLRNKHVAVKGGQILFE
FRGKSGVEHKVSVKDRKLAAVIKRCMELPGQNLFQYLDEDGVRHAVTSSDINAYLQSLTG
SDFTAKDYRTWAASALALATLQKLHWEPEADAKRHIVDMVKAVSRQLGNTPAICRKCYIH
PAVLEGFLLGNLAKLPRSRQRKGLRLEEVALASYLRLLADNVGAVAKEGKS
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgcctgactcgactgccctcagccagcccgccagtgacctgcactacgtagacgacacc
cagccgggttttacgcgcaagatactgcgcggaaaattcgcctacttcgacaccaaaggt
cagcgcatcaaggatgagtcagagttcaagcgcatcaacgcgctggctgtgccacccgcc
tacaccgacgtgtggatctgcgccgacccgatggggcatttgcaggccaccgggcgggat
gcgcggggtcgcaagcagtatcgctatcatccgcgctggcgcgaaataagggatcaggac
aaatattcacgcctgatcgagttcggccacgcgctgcccaaagtccgcaggcagatcgaa
gcgcagctggcccagcccggcatgggccgggaaaaagtcatggcgacggttatttcactg
ctcgacgcgacgctgatccgcatcggcaacagccagtacgccaaggaaaaccgctcgtat
ggcttgactacattgcgcaacaagcatgtggcggtcaaaggtgggcagatcctcttcgag
tttcgcggcaaaagcggcgtcgagcacaaagtcagcgtaaaagaccgcaagctcgccgct
gtgatcaagcgctgcatggaactgccggggcagaatctgtttcagtacctggacgaagac
ggcgtgcgccatgccgtgacctcttcggacatcaacgcgtacctgcaaagcctcaccggc
tcggacttcaccgccaaggactaccggacctgggccgccagcgcactggccctggccacc
ttgcaaaagctgcattgggaaccggaagccgacgccaaaaggcacatcgtcgacatggtc
aaggccgtctccaggcaactgggcaacaccccggccatctgccgcaaatgctacattcat
ccggcagtgctggaaggcttcctgctcggcaacctggccaaactcccgcgctccagacaa
cgcaaaggcttgcgcctcgaagaggtagcgctggccagctacctacgactactggcggac
aacgtcggcgccgtcgccaaagaaggcaaatcctga
DBGET
integrated database retrieval system
