KEGG   Pseudomonas cannabina pv. alisalensis: JGS08_14555
Entry
JGS08_14555       CDS       T07379                                 
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
pcab  Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:pcab00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pcab03000]
    JGS08_14555
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pcab02044]
    JGS08_14555
Transcription factors [BR:pcab03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    JGS08_14555
Secretion system [BR:pcab02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   JGS08_14555
SSDB
Motif
Pfam: Sigma54_activat AAA_lid_14 Sigma54_activ_2 HTH_8 HTH_30 AAA_5 AAA_7 AAA_2 GAF HTH_50 AAA_16 T2SSE
Other DBs
NCBI-ProteinID: QQN24722
LinkDB
Position
complement(3264040..3265566)
AA seq 508 aa
MVSSLNTRQDPLSEAQTLISYYSRLAQSADSQSLLHDFAMSAAELCHCEAIQLFLFDAGC
KRLGLAAEVMDGVVRNGTQKSPSDDYGDQPFLQFSLLQKEIVSIAHIDDSLYDTGFLPTH
VKKWKSLLCLPLLDGDQSPQGLLICVSRHHKELRGYAEAVGALGSFVISQLSLLELSDKP
TDPSRPSRRRRSQTAQYGLIGNSAALSRTTYLLSKILDSTCTVLLTGETGTGKEIVSRAI
HEHGPRRENAFVVQNCAAFPEALLESELFGYRKGAFTGADRDRHGLFDAADGGTLLLDEI
GDMPMLLQAKLLRVLQEGEIRPLGSNTVRKVDVRIIAATHRDLPTLVAEGRFREDLYYRL
AQFPIELPPLRQRNEDIEVLARHFADEACLHSNRAAVHWSEAALQALSNYAFPGNVRELK
GFVERAVLLCENGELTPEHFPVPATVSDPVRLTLRERMEQFERSVLLECLSDSGGNRTRA
AHTLGVSRRTLLYRLAHLKVAAHYGRRH
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggtgtcgtccctgaatacacggcaggatccgctgagtgaagcgcagacactgatttcg
tattattcacgcctggcgcagtcagccgacagccagtcgctgctgcatgatttcgcgatg
tccgctgctgaactttgtcactgtgaagcaattcagcttttcctgttcgatgcaggctgc
aaacgcctcggtcttgcggctgaagtgatggacggcgtcgttcggaacggaacacaaaag
agtccttcggatgactacggcgatcagccttttttacagttcagcctgcttcagaaagag
attgtcagcattgcgcacatcgatgacagcctttacgacaccgggtttttgccaacccat
gtaaagaaatggaaatcactgctgtgcttgccgttgcttgatggagatcagtcgcctcaa
gggctgctgatctgtgtgagccgacatcacaaggaactgcgcggttatgccgaagcggta
ggtgcgttgggctcgtttgtcatctcgcaattgtccctgctcgagctatcggacaagccg
acagacccctcgcgcccctcgcgcaggcgccgttcacagacggcacagtacggtcttata
ggaaacagcgccgcgctgagccgcaccacctatctgctgagcaagattctggacagcacc
tgtaccgtgttgctgaccggcgagaccgggacaggcaaggaaatcgtgtcacgcgcgatc
catgagcacggacctcgtcgcgagaacgcgttcgttgtgcagaactgcgcagcgtttcca
gaggcgcttctggaaagtgagctgttcggctaccgcaaaggcgcgtttaccggggccgat
cgagatcggcacggtctgttcgacgcggccgatggcggtacgcttctgctcgacgaaatt
ggcgatatgcccatgcttttgcaagccaagcttctgcgcgtactgcaggagggagagatt
cgtccgctgggctctaacactgtacgcaaagtcgatgtgcgaatcattgcggccacccat
cgggatctcccgacgctggttgcagaagggcgttttcgtgaagatctttactaccggctt
gctcagtttcccattgagcttcctccgctacgtcaacgtaacgaagacattgaggtactg
gcccggcactttgccgatgaggcctgccttcattcaaatcgtgctgcggtgcactggtca
gaggccgcgttacaagcgctgtccaactatgccttccccggtaatgttcgcgagctgaaa
gggtttgtcgagcgcgcagtactgttgtgtgagaacggcgagttgacaccggaacacttt
cctgtacccgccactgtcagcgaccccgtgcgcttgacgctgcgtgagcgtatggagcaa
ttcgagcgcagcgtgctgctcgagtgcctgagcgacagcggaggcaaccgaactcgtgca
gctcatactttaggtgtatcgcgacgcactctgctttatcgcctggcgcatttgaaggtc
gctgcccactatggacggcgccattaa

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