Pseudomonas cannabina pv. alisalensis: JGS08_14560
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Entry
JGS08_14560 CDS
T07379
Symbol
tssH
Name
(GenBank) type VI secretion system ATPase TssH
KO
K11907
type VI secretion system protein VasG
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab02025
Biofilm formation - Pseudomonas aeruginosa
pcab03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
JGS08_14560 (tssH)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
JGS08_14560 (tssH)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pcab02044
]
JGS08_14560 (tssH)
Secretion system [BR:
pcab02044
]
Type VI secretion system
Imp/Vas secretion system core components
JGS08_14560 (tssH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
AAA
AAA_5
AAA_16
ClpB_D2-small
AAA_22
TniB
NBD_SMAX1
AAA_7
nSTAND3
AAA_25
Clp_N
NACHT
Sigma54_activat
ResIII
IstB_IS21
AAA_29
AAA_24
Hpr_kinase_C
Motif
Other DBs
NCBI-ProteinID:
QQN19874
LinkDB
All DBs
Position
complement(3265568..3268165)
Genome browser
AA seq
865 aa
AA seq
DB search
MINPDLQQLVNALDLPTRKELESTAERCVSRGSSKILVDDLLFALLERPEGILARALLDA
SVSAAEFAGLLFPPIEQCADCNPVFSSELVQWLQDALLISTLDLGQSHIDQAALILALLR
NPLRYADRPYQPLLAKINIERFRDYALAEQVSGLARQTVDHGESLLERFTHNLTHQARGG
LLDPVLCRDDCIRQMIDILARRRKNNPIVVGDAGVGKTAIVEGLALRIVQGEVPDLLKDV
ELLSLDMGLLQAGASIKGEFERRLKGVIDEVKSSSTPIILFIDEAHTLIGAGAQAGTADA
ANLLKPALARGELRTIAATTWAEYRQYFEKDPALARRFQPIRVLEPTVDQAVTILRGLAP
TYERSHGVYLRDDAVVAAARLSARYLSGRQLPDKAVDLLDTACARVRISLVAVPERLECL
RGELAQQQRHFDAIQRDVDAGMQVDANVLETLSSTISGIKTRAAGLECAWVDQQALANRL
LDLRRQLASLTVQQHAGPARASKCTQALQSALAEVQQALVSAQVNDRLVSYEVCPRLIAE
VVHAWTGIPLSQLVQEHSLSIAGFSSGLRSRIRGQEQAMQAIERSVKASAAGLNAPGAPT
GVFLLVGPSGVGKTETAIALADLLYGGERFLTTINMSEFQEKHTVSRLIGAPPGYVGYGE
GGMLTDAVRQKPYSVVLLDEVEKADPDVMNLFYQIFDKGMANDGEGREINFRNTLILMTS
NLGSDVIHASCRNGRRPDATELEAVIKPILTAHFKPALLARIRVVPYYPVEGAVLQELLE
LKLMRLGERLENRGLTFSYSQELVSHLLERCTQGDSGARLIDRLLESCLTPLITNRLLSA
MSTGAVVSVVHATLDGSGGIVCEFE
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgattaatccagatttgcagcaactcgttaatgcccttgatttacccacccgcaaagaa
cttgagagcaccgcagaacgctgcgtgtccagaggcagcagcaagattctggtagacgac
ttgctgtttgccctccttgaacgcccagaaggaatacttgcccgtgctctgcttgacgca
agtgtttcagctgcggagtttgcaggtttgctgtttccgcccatcgagcaatgtgcagac
tgtaatccggtattttccagcgaacttgttcagtggcttcaggatgccttgttgatttct
acgctggacctggggcaaagccatattgatcaggcggcgctgatacttgctttgctgcgt
aatccattgcggtacgcagatcggccgtaccagccattgttggctaagatcaacattgaa
cgttttcgcgattatgcgcttgctgaacaggtgtccggcttggcgaggcaaacggttgac
cacggtgagtccctgctcgaacgcttcactcataacctgacacatcaggccagaggcggg
ttgctggacccggtgttatgtcgcgatgactgcatacgccagatgatcgacatactggct
cgaaggcgtaagaacaatccgatcgtggtcggcgatgcgggtgtcggcaagactgcgatt
gtcgaagggctggcgctgagaatcgtgcagggagaagtccctgatcttttgaaagacgtc
gagctgttgtcgctggatatgggattgcttcaggcgggtgccagcatcaagggtgagttc
gagcgccgtctgaaaggtgtcattgacgaggtcaagtcatcgtcgacgccgatcattctg
ttcatcgatgaagcccacacccttatcggggccggcgcccaggcaggcacggcggacgca
gccaatcttttgaagccggcgctggcgcgtggcgagctgcgcacgattgcagccactacc
tgggccgagtaccggcaatatttcgaaaaagatcctgcgcttgcacgtcgtttccagccg
attcgtgtgctggagcccaccgtggatcaggccgtcaccatcctgcgtgggcttgccccg
acctatgagcgcagccatggtgtctatttacgtgatgacgcagtcgttgccgctgcccgg
ctatcggcgcgttacttgtccggacgacagttgcccgacaaggcagtcgatctgcttgat
accgcctgcgcccgagtgcgcatcagtctggtcgcggtgcccgagcgacttgagtgtctg
cgaggcgaactggctcagcaacagagacactttgatgcaatacagcgtgatgtcgatgcc
ggcatgcaggttgatgccaatgttttggagacgttgtcttcgactatctcagggataaag
acccgcgcagccgggctagagtgcgcgtgggttgaccaacaggcactggctaatcggctg
cttgatctgcgtcggcaattggccagcctaacagtgcagcagcacgccgggcctgcccgg
gccagcaagtgcacgcaggcactgcagtcagcgttggccgaggttcaacaggcgctggtc
agcgctcaggtcaacgaccgtcttgtgagttacgaagtctgtccacggctgatcgcggaa
gttgtgcacgcctggacgggtatcccgttatctcagcttgtgcaggagcacagtctcagc
attgccggtttctcatccggactgcgttcgcgcatccggggtcaagagcaggcgatgcag
gccatcgaacgatccgtaaaagcgtcggccgcgggtttgaatgcgcccggagcgccgaca
ggtgtatttcttctggtcgggcccagtggtgtgggcaagaccgaaacggctatcgcgctg
gctgatctgttgtatggcggcgagcgctttctgaccaccatcaacatgtccgagtttcag
gagaaacatactgtctcccgcttgatcggtgcgcctcccggctatgttggctatggcgaa
ggcggcatgttgacggatgcggttcgacaaaagccctactcggtggttctgctcgatgag
gtagaaaaggcagatccggatgtaatgaacctgttttatcagatcttcgacaaaggcatg
gctaatgacggggagggcagggaaatcaactttcgcaatacgcttatcctgatgacatcc
aacctgggcagtgatgtgattcatgcaagttgccgaaacggacgccgcccggatgcaaca
gagctggaagcagtcatcaagccgatactcactgcacatttcaaaccggcattgttggcc
agaatacgtgtcgtgccgtattaccccgttgaaggtgcagtgctgcaggaattgcttgag
ctgaagctgatgcgccttggtgaaaggctcgaaaaccgtggactgacgttcagttactcg
caggagctggtcagtcatctgctggaacgttgtacgcagggcgatagcggcgccaggctg
attgatcgtttgctggagtcgtgcctgacaccgctcatcacaaaccgtctgctcagtgcc
atgagcactggcgctgtcgtttccgtcgttcatgcaacgctggatggctcgggcggaatt
gtctgtgagttcgaataa
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