Pseudomonas cannabina pv. alisalensis: JGS08_15135
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Entry
JGS08_15135 CDS
T07379
Name
(GenBank) multidrug efflux RND transporter permease subunit
KO
K18296
multidrug efflux pump
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Module
pcab_M00639
Multidrug resistance, efflux pump MexCD-OprJ
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pcab02000
]
JGS08_15135
01504 Antimicrobial resistance genes [BR:
pcab01504
]
JGS08_15135
Transporters [BR:
pcab02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JGS08_15135
Antimicrobial resistance genes [BR:
pcab01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexCD-OprJ [MD:
M00639
]
JGS08_15135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
QQN19975
LinkDB
All DBs
Position
3387116..3390262
Genome browser
AA seq
1048 aa
AA seq
DB search
MSLFFIKRPNFAWVLALFILLAGLMALPALPVAQYPNVAPQQVTITATYPGASAKVLVDS
VTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQNRIKKAEARLPQ
TVLSQGLQVEQASSGFLMIFTLNYGGDSANKDTVALADYAARNVNNEISRVNGVGRLQFF
AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPGTSLQELTATLAVKG
TLDNPEEFGRIVLRANQDGSAVHLSDVARVAIGSQDYSFESRLDGKRAVAGAVQLSPGAN
AIETVKAVKQRLTELSVNFPEGVEFSVPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMYLF
LQNIRYTLIPTIVVPVCLAGTLAIMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVER
IMAEEGLSPTAATIKAMQQVSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSI
LFSGFLALTFTPALCATLLKPIPAGQHEKRGFFGGFNRLFGRFTDRYERVSSSMIKRAGR
YMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLIIDVQLPPGATRARTDATAQLLENYMLS
REATGAVTMLLGFSFSGMGENAGLAFPTLKDWSVRGDGQSAGEEAAAFNQHFAGLSDGTV
MAVTPPPIEGLGTSGGFALRLQDRAGLGREALLAARNELLGKANGNPKILYAMMEGLAEA
PQLRLNIDREKARALGVSFESISSALSTAFGSSVISDFANAGRQQRVVVQAEQGARMTPE
SVLKLYVPNSSGTLVPLGAFVSTHWEEGPVQIARYNGYPTFRIAGDAPPGVSTGEAMAEI
ERIVSELPAGIGYEWTGLSYQEKVASGQAAGLFALALVVVFLLLVALYESWAIPLVVMLI
VPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWDQGHSLRDAAL
QAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRALGTGVIGGMLSATLLGVILVPIF
FVWVLSVLRRKPHNAQQNADAEQLPGKE
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgttctttatcaagcggcccaactttgcctgggtgctggccctgttcattctg
ctggccgggctgatggccctgcccgccctgccggtggcgcaatacccgaacgtggcgcca
cagcaagtcaccatcactgccacctaccccggcgcatcggccaaagtgttggtggattcg
gtgaccagcgtcattgaagaagagctcaacggtgccaagggcatgctgtattacgagtcg
accagcaactcgaccggcagcgccgaaatcaatgtcaccttcgtgccaggcaccaacccg
gacatggcgcaggtcgaagtgcagaaccgcattaagaaagccgaagcgcgcttgccgcag
accgtgctcagccagggtttgcaagtcgagcaggccagctccggcttcctgatgatcttc
accctgaactacggcggcgattcggccaataaggacacggtcgctctggccgactatgca
gcacgtaacgtcaacaatgaaatcagccgggtgaacggcgtcggcaggctgcagttcttt
gcggccgaagccgccatgcgggtctggatcgatccgcagaaactggtcggcttcgggctg
tccatcgacgatgtcaacgcagcgattcgcgcccagaacgtgcaggttcctgcgggcagc
ttcggcagcagtccgggtacatcgttacaagagttgactgcaaccctggcggtcaagggc
accctggacaacccggaagaattcgggcgcatcgttttgcgtgccaatcaagacggttct
gcggtgcacctttccgacgtcgcgcgggttgccatcggcagtcaggattacagtttcgaa
tcacgcctggacggcaagcgtgcggtggccggtgcggttcagctgtcaccaggcgccaac
gcgatcgaaaccgtgaaggcagtcaagcagcggctcaccgagctgtcggtgaacttcccg
gaaggcgtcgaattttccgtgccgtatgacacctcgcggtttgtcgacgtggccatcgac
aaggtgatctacaccctgatcgaagccatggttctggtattcctggtgatgtacctgttc
ctgcagaacatccgctacacgctgattccgacgattgtggtgccagtgtgtctggccggt
acgctggcgatcatgtacctgctgggtttctcggtgaacatgatgaccatgttcggcatg
gtgctggccatcggcattctggtcgacgacgcgattgtagtggtcgagaacgtcgagcgg
atcatggccgaagaaggcctctccccgaccgctgcgacaatcaaggcgatgcaacaggtg
tccggggcgattttcggcatcacgctggtgctggctgcggtgtttctgccgctggccttc
atgggtggctcggtcggggtgatctaccagcagttttcgctgtcgctggcggtgtcgatt
ctgttctctggctttctggccctgaccttcaccccggcgctgtgcgcaaccctgctcaag
ccgatccccgccggtcagcacgaaaagcgcgggtttttcggcgggttcaatcgtctgttc
ggtcgctttaccgaccgctacgaacgggtcagttccagcatgatcaagcgcgccggtcgc
tacatgttgctgtacgtcggcatcgtcggcctgctgggctttttctacctgcgcttgccg
gagtcattcgtgccggtcgaagatcagggctatctgatcatcgacgtgcaactgccgccc
ggagcgacgcgggcgcgtaccgacgccaccgcgcagttgctggaaaactacatgctgtcc
cgcgaagccacgggtgccgtgaccatgctgctggggttcagcttctccggcatgggcgaa
aacgccggcctggcattcccgactctcaaagactggtcagtgcgtggcgacggacaatcg
gccggtgaagaagccgccgcgttcaatcagcactttgccggcctgagcgacggtacggtc
atggccgtgacgccgccgcccatcgagggtttgggcacctccggcggtttcgcgttgcgc
ctgcaggaccgtgcaggtctgggccgcgaagcgttgctggcggcgcgcaacgagctgctg
ggcaaagccaacggcaatccgaaaatcctttacgccatgatggaaggcctggccgaagcg
ccgcagttacgcctgaatatcgaccgcgaaaaggcgcgcgcgctgggggtcagcttcgag
tcgatcagcagcgccctgtccaccgcattcggttcttcggtgatcagcgacttcgccaat
gccgggcgtcagcagcgggtcgtggtgcaggccgaacaaggcgcgcggatgacgccggaa
agcgtgctcaagctgtatgtgcccaacagcagcggcacactggtgccactgggcgcattc
gtttcgacgcactgggaagaaggcccggtgcagatcgcccgttacaacggctaccccacg
ttccgcatcgcaggcgacgcaccgcccggggtcagtaccggcgaggccatggccgagatc
gaacgcattgtttccgaattgcctgcgggcatcggctatgaatggaccggcctgtcgtat
caggaaaaagtcgccagcggtcaggccgccgggctgttcgcactcgccctggtggtggtg
tttctgttgctggtcgcgctctacgagagctgggcgattccactggtggtgatgctgatc
gtcccggtgggcgcgctgggttcggtgctggcggtcacggcggtgggcatgcccaacgat
gtgtatttcaaagtcgggctgatcaccatcatcgggctggccgcgaaaaacgcgattctc
atcgtcgaattcgccaaggaactgtgggatcagggccattcactgcgtgatgcggcgctg
caggcggcaaggctgcgcttccggccgattgtcatgacctcgctggcgttcatcctcggc
gtcgtgccgcttacactggccaccggcgcaggcgctgccagccagcgggctctcggcacc
ggggtgatcggcggcatgctcagcgcgacattgctgggggtgattctggtgccgatcttc
tttgtctgggtgctgtcggtgctgcgtcgcaagccgcacaacgcgcagcagaatgccgac
gcagagcaactgccgggcaaagaatga
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