Pseudomonas cannabina pv. alisalensis: JGS08_16810
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Entry
JGS08_16810 CDS
T07379
Symbol
sucD
Name
(GenBank) succinate--CoA ligase subunit alpha
KO
K01902
succinyl-CoA synthetase alpha subunit [EC:
6.2.1.5
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab00020
Citrate cycle (TCA cycle)
pcab00640
Propanoate metabolism
pcab00660
C5-Branched dibasic acid metabolism
pcab00720
Other carbon fixation pathways
pcab01100
Metabolic pathways
pcab01110
Biosynthesis of secondary metabolites
pcab01120
Microbial metabolism in diverse environments
pcab01200
Carbon metabolism
Module
pcab_M00009
Citrate cycle (TCA cycle, Krebs cycle)
pcab_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
JGS08_16810 (sucD)
00640 Propanoate metabolism
JGS08_16810 (sucD)
00660 C5-Branched dibasic acid metabolism
JGS08_16810 (sucD)
09102 Energy metabolism
00720 Other carbon fixation pathways
JGS08_16810 (sucD)
Enzymes [BR:
pcab01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.5 succinate---CoA ligase (ADP-forming)
JGS08_16810 (sucD)
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Gene cluster
GFIT
Motif
Pfam:
CoA_binding
Ligase_CoA
Succ_CoA_lig
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
QQN20289
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Position
complement(3749314..3750195)
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AA seq
293 aa
AA seq
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MSVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLNLPVFNTVKEA
VETTGATASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTIDMLEAKVKCDELGVILI
GPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDAGFGQSTCVGIGG
DPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAYIKAHVTKPVVSYIAGVTAP
PGKRMGHAGAIISGGKGTADEKFAALQDAGVKTVRSLADIGKALAELTGWPTK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcctgatcaataaagacaccaaggttatctgccagggtttcactggttcgcaa
ggtaccttccactccgaacaagccattgcctacggcactaaaatggtcggcggcgtaaca
ccaggcaaaggcggcaccacgcacctgaacctgccagtgttcaacaccgtgaaagaagcg
gtagaaaccactggcgcaaccgccagcgtgatctacgttccggctcctttctgcaaggat
tccatccttgaagcagcgttcggcggcatcaagctgatcgtctgcatcaccgaaggcatc
ccgaccatcgacatgctggaagccaaggtcaagtgcgacgagctgggtgtgatcctgatc
ggccctaactgcccaggcgttatcactccgggcgagtgcaagatcggcatcatgccaggc
cacatccacttgccaggcaaagtaggcatcgtgtcgcgttccggcaccctgacctacgaa
gctgtgaagcagaccactgacgccggtttcggtcagtccacctgcgtcggcatcggcggt
gacccgatccctggttcgaacttcatcgacatcctgaagctgttccaggaagacccgcag
accgaagcgatcgtcatgatcggcgagatcggcggttcggctgaagaagaagcggctgcc
tacatcaaggcacacgtgaccaagccggttgtttcctacatcgccggtgtgactgctcct
ccgggcaagcgcatgggccatgccggtgcaatcatctccggtggtaaaggtactgcagac
gagaaattcgctgccctgcaggacgctggcgtaaaaaccgtgcgctccctggcagacatc
ggcaaggctctggccgagctgacgggttggccgaccaagtaa
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