Pseudomonas cannabina pv. alisalensis: JGS08_17410
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Entry
JGS08_17410 CDS
T07379
Name
(GenBank) DEAD/DEAH box helicase family protein
Organism
pcab
Pseudomonas cannabina pv. alisalensis
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SNF2_assoc
SWIM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQN20397
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Position
3920198..3922957
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AA seq
919 aa
AA seq
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MSSILEKVLASAWTDLFHDRTLERGRDYARQKRIVLEDSSPQIIRTACRGSGLEIYTQTL
LFKDPDRYKNYLTCKCTCPVRNDCKHCVAALLFLQDPQNRPLLQAALSSHQREMEQHADQ
QQIAQKPKLPERLIDDLQPRPRLILASVEFSAYEPRNGRMQRHVQHRAALAFAYGKHYAV
GTTNVSILVSSLGSDLVNQKSDIIEHTETETLRIRRQGEKERQLRQELADLGFKVATRQS
KALPDSAGDMYELPNDKAWLHFVLDDLPRLREQGWEIEIQEEFGFDVTPVDDWYAVIDEE
TERDWFDLELGIIVNGERLSLLPILINLIRSHPELMSPTAVAKRGDEEQLLVQLNHFTQS
GGSPVQIALPYGRLKPVLATLGDFYWRQDGNNALRMSKADAARLTQLEDLPLTWQGGDRL
RHFAERLINIKDAPVSLPDGLNATLRPYQLEGLSWMQSLRELEVGGVLADDMGLGKTLQT
LAHLLMEKQAGRLDRPALAVMPTSLIPNWLDEAEHFTPDLKVLALYGANRHQDAGNLQDY
DLILTTYALLPRDLELLEKQPFHVLILDEAQYIKNPNSKAAQAARNLNARQRLCLSGTPL
ENHLGELWSLFHFLMPGWLGNSKEFNSNYRTAIEKHGNQDRLHHLNARIKPFLLRRTKEQ
VATELPPKTEIIHWVDLNDAQRDVYETVRLAMDKKVRDEITRKGVARSQIIILEALLKLR
QVCCDLRLVNHDMPVNSKQGTSGKLNSLMEMFEELLAEGRKILLFSQFTSMLSLIEEELK
QRGIAYALLTGSTRDRRTPIHDFQSGKLPIFLISLKAGGTGLNLTAADTVIHYDPWWNPA
AENQATDRAYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGVLDGRTTGDWKLRD
EDLQALFAPLPAAPKKTRK
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtccattcttgaaaaagtcctggcttcggcctggacagacttattccatgatcga
acgcttgagcgagggcgcgactacgcccggcaaaaacgcatcgtgctggaagactccagc
ccgcagatcatccgtaccgcgtgccgtggctcgggcttggaaatctatacccagaccctg
ctgttcaaggaccctgatcgctacaagaattacctgacctgcaaatgcacctgcccggtc
cgcaacgattgcaaacattgcgtggccgccctcctgtttttgcaggacccgcaaaaccgg
ccgctgttgcaggctgccctgagttcgcaccagcgcgaaatggagcagcacgccgatcag
cagcaaatcgcgcaaaagcccaagctcccggaacgtctgatcgatgacctgcaaccgcgg
cccaggctcattctggccagcgtcgagttcagcgcctacgagccgcgtaacggccgtatg
cagcgccatgtgcagcatcgcgccgcgctggccttcgcttacggtaagcattacgcggtg
ggcaccaccaatgtgagcattctggtcagttcactgggcagcgacctggtgaaccagaaa
agcgacatcatcgagcacaccgaaaccgaaaccctgcgcatacggcgtcagggcgaaaaa
gagcggcaactgcgccaggaactggccgacctgggcttcaaggtcgccacacggcagagc
aaggcattgcccgacagcgccggcgacatgtacgaactgcccaacgacaaggcctggctg
cattttgtgctcgacgacctgccacgcctgcgcgagcaaggctgggaaatcgagattcag
gaagagtttggcttcgatgtcacaccagtggacgactggtacgcggtcatcgacgaagaa
accgagcgcgactggttcgacctggaactgggcatcatcgtcaatggcgaacgcctgagc
ctgctgccgatcctgatcaacctgatccgcagccatcctgaactgatgagcccgaccgcc
gtggccaagcgcggcgatgaagaacaattgctggtgcaactcaatcatttcacccagagc
ggcggcagcccggtgcagatcgccctgccctacggtcggctcaagccggtactggcaacg
ctgggcgatttttactggcgtcaggacggcaacaacgcgctgcgcatgagcaaggccgat
gccgcgcgcctgacccagctcgaagacctgccgttgacctggcagggcggcgaccgtctg
cgccacttcgccgagcgcctgatcaacatcaaggacgcgccagtcagcctgcccgatggc
ttgaacgctacactgcgtccgtatcagctggaaggcctgagctggatgcagtcgctgcgc
gagctggaagtcggcggcgtgctggccgatgacatgggcctgggcaagacgctccagacc
ctcgcccacctgttgatggagaaacaggccgggcgcctcgaccgccctgcgctggcggtc
atgccgaccagcctgatccccaactggctggacgaagccgagcatttcaccccggacctc
aaggtgctggcgctgtatggtgccaaccgccatcaggacgcaggcaaccttcaggattac
gacctgatcctgaccacttacgcactgctgcccagagacctggaactgctcgaaaaacag
cctttccacgtattgattctcgatgaagcacagtacatcaagaaccccaacagcaaggct
gcccaggccgcgcgcaaccttaacgcccgtcagcgcctgtgcctgagcggcacgccgctg
gaaaaccacctgggcgaactgtggtcgctgttccacttcctgatgcccggctggctgggc
aacagcaaggaattcaacagcaattaccgcacggccatcgaaaagcacggcaatcaggat
cgcctgcatcacctgaatgcacgcatcaagccgttcctgttgcgccgtaccaaggaacag
gttgcgaccgaactgccgccgaagaccgagatcattcactgggtcgacctcaacgacgcg
cagcgtgatgtgtacgaaaccgtgcgcctggcgatggacaagaaggtcagagacgaaatc
acccgaaaaggcgtggcacgcagccagatcatcattctggaggcgctgctcaagctgcgt
caggtgtgctgcgacttgcggctggtcaatcacgacatgccggtcaacagcaaacaaggc
acgtcaggcaagctcaacagcctgatggagatgttcgaagaactgctggctgaagggcgc
aagattctgctgttctcgcaattcacctcgatgctcagcctgatcgaagaagagctgaaa
cagcgcggcattgcctacgccctgctgaccggctcgacccgagatcgccgcacgccgatt
catgacttccagagcggcaagctgccgatcttcctgatcagcctgaaagccggcggcacc
ggcctcaacctgaccgctgccgataccgtgatccactacgacccgtggtggaaccctgcc
gcagaaaatcaggcaaccgaccgcgcctatcgcatcggccaggacaagccggtgttcgtc
tacaagatgatcgcgcgcggcacggtggaagagaaaatccagcgcctgcaacgggaaaaa
tccgcgttggcagccggcgtgcttgatggccggaccaccggcgactggaagctgcgcgac
gaagacctgcaggcacttttcgcgccgttgcctgccgcgccaaaaaagacccgcaagtga
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