Pseudomonas cannabina pv. alisalensis: JGS08_17885
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Entry
JGS08_17885 CDS
T07379
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab02020
Two-component system
pcab02025
Biofilm formation - Pseudomonas aeruginosa
pcab02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JGS08_17885
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
JGS08_17885
09142 Cell motility
02040 Flagellar assembly
JGS08_17885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcab03021
]
JGS08_17885
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pcab02035
]
JGS08_17885
Transcription machinery [BR:
pcab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JGS08_17885
Bacterial motility proteins [BR:
pcab02035
]
Flagellar system
Flagellar assembly proteins
Stator
JGS08_17885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_30
UPF0122
MarR_2
GerE
Phage_terminase
Rv2175c_wHTH
Motif
Other DBs
NCBI-ProteinID:
QQN20483
LinkDB
All DBs
Position
complement(4009519..4010259)
Genome browser
AA seq
246 aa
AA seq
DB search
MTASGYQMYSKSSRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVS
TKYDSTKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAK
DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLEPSRDLEDE
RFQAALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRL
GEWRAR
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgagcggctatcagatgtacagcaagagttctcgtaattcgcaatacgagttg
atcgagcggtatgcgccgctggtcaagcgtatcgcctaccacctgctggcgcgtttgccg
gccagcgtgcaggtggaagatctgattcaggccggcatgatcggtctgcttgaggtctcc
accaaatacgattccaccaagggtgcgagtttcgagacctacgccggcattcgcattcgt
ggcgcgatgctcgacgaagtgcgcaagggtgactgggcgccacgctcggtccaccgcaat
acacgcatggtcagtgacgcaattcgcgcaattgaagctaaaaccggacgtgacgctaaa
gatcacgaggttgcggccgaactccagttgagtcttgatgattattacgggattttgaat
gataccttgggcagccgccttttcagtttcgacgacctgctgcaggacggcgatcatgaa
gggctgcacgaggatggcgcgagcggttcgctcgagccgtcgcgcgacctggaagacgag
cgcttccaggccgcgttggccgatgcaattgccaatttgccggagcgtgagcgtctggtg
ttggcgctgtactacgacgaagagctgaacctcaaggaaatcggagaggttctgggtgtc
agcgaatcgcgagtcagtcagttacacagccagtgcgcagctcgtttgcgagggcgtttg
ggggagtggcgagcgcgttga
DBGET
integrated database retrieval system
