Pseudomonas cannabina pv. alisalensis: JGS08_20885
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Entry
JGS08_20885 CDS
T07379
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcab03000
]
JGS08_20885
Transcription factors [BR:
pcab03000
]
Prokaryotic type
Helix-turn-helix
Other families
JGS08_20885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
GAF
AAA_5
AAA_2
Mg_chelatase
MCM
AAA
PAS_8
HTH_50
AAA_16
PAS_7
ATPase
Motif
Other DBs
NCBI-ProteinID:
QQN21032
LinkDB
All DBs
Position
4658892..4660889
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AA seq
665 aa
AA seq
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MNQPPAALSAEDRDYLTALVPASLNAGPGSALDQAWQACLQGAIDRPPGIRQVVWESWLR
SVNAGLDPEDGEYRFVTPAELAATQAANRVLITVAAQVMRGLLAYNPKGHINLTDAEGTT
LYFCGLDLTPVGSRLLESVQGTNCTGLAIIEDRLVYVLAEENFGLGLRQRRMHCAAAPIR
DAQGRTLGMLTLTAEPGWFHFHTLGTVQSAAEAVSRQMALQALLEEQQTVLEVLNEGLVV
LDDQGCIKALNHYARQLFRVGRDLLGSPFKSLGQSELTDSVLLGSQEGVRDLDCTFELHD
RSHLACLVSVCPLEQGGRIVSLRENRRIREITRRIIGTQASYTFETILGRSQAIQDAMHL
ARIASRSDSTTLILGESGTGKELFAQAIHNASDRRAGPFVAVNCGAIPRELVQSELFGHV
EGAFTGSARGGSAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGEVTRVGAKKSLRV
NVRIVAATHRNLSQAVADGAFREDLYYRLNVLNMTVPPLRMRREDVPLLARHFLARCARS
LRKSMQDFSPAALDILGTYHWPGNVRELENVIERATNLAMTELIEPSDLALEIRQGGRPS
TRGMAPEPRMAQDLGTYEMNAIIAALKDTRGNIRLAAQRLNVSRGGLYNKMSRFGLNVDT
FRSCD
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagccacctgccgcattgagtgccgaagaccgcgattacctcacagcattagtc
ccggcttctttgaacgcaggaccgggcagcgcgctggatcaagcctggcaagcgtgcttg
cagggggcgatcgatcgccctccaggcatcaggcaggtggtttgggaatcctggttgcgc
agcgtcaatgccgggcttgatccagaggatggtgaataccgttttgtgacgcccgccgag
ctcgctgcaacgcaggcagccaatcgggtgctgatcacagtagcggcgcaagtcatgcga
ggtttactcgcctataaccccaaaggccatatcaacctgaccgatgccgaaggcacgaca
ttgtatttctgtggccttgacctgacccccgtaggcagtcgactgctggagtcggtgcag
ggcaccaattgtaccgggctggcgatcatcgaagatcgtttggtctatgtgctcgccgag
gagaacttcgggcttggcctgcgccaacgccgcatgcattgcgccgccgcgccaatccga
gatgcccagggcaggacgctgggtatgttgaccttgacggcagagcctggctggtttcat
ttccacacgctgggtactgtccagtcggccgccgaggcggtttcgcggcagatggcgctg
caagccttgctggaagagcaacagactgtgcttgaagtgctcaacgagggcttggtggta
ctggatgatcagggctgtatcaaagcgctcaaccattacgcccgacagttgttccgcgtg
ggccgcgacctgctcggcagtccattcaaaagcctggggcaaagcgagttaactgactca
gtcctgctcggcagccaggaaggggtgcgggacctggattgcaccttcgagttgcacgac
cgtagtcatctggcgtgcctggtgtcggtctgcccgctagagcaaggcgggcggattgta
tcgttgcgcgagaaccgacgtattcgggaaatcacccggcgaatcatcggcactcaggcc
agctacaccttcgaaaccatcctgggccgctctcaggcgattcaggatgcaatgcatctg
gctcgcatagccagtcgcagtgattcgaccacgctgattctcggtgagagcggcactggc
aaggaactgttcgcccaggcaatccataatgccagcgaccggcgtgcgggccctttcgtg
gcggtcaattgcggagccattccccgcgaactggtgcaaagcgagctgttcggtcatgta
gaaggtgctttcaccggatcggctcggggtggttcggcaggaaaattcgaattagccgat
ggaggaacgatctttctggacgaaatcggtgacatgtcctttgatgcgcaggtcagcttg
ctgcgcgtgctgcaggaaggtgaagtcacacgcgtgggggcgaaaaaatctctgcgggtc
aacgttcgcatcgtcgccgccactcaccgcaacctgagccaggcggtggccgacggcgcc
tttcgtgaggatctttactaccgactcaacgtgctgaatatgacggtgccgccattgcgg
atgcgccgcgaagatgtgccgctgctggcacggcattttctggcgcgttgtgcccggtcg
ttgcgcaagtcgatgcaggacttttcacccgcagcgctggatattcttggcacctatcac
tggccgggcaatgttcgcgagctggaaaacgtcattgagcgagcgaccaacctggcaatg
accgaattgatcgagccgagcgatctggcgctggaaatcagacagggtgggcgaccctcg
acgaggggaatggcgcccgagccccgaatggctcaggacctcggcacctatgagatgaat
gcgatcattgctgccctgaaagacacgcgcggaaatatccgtctggctgctcaacggctg
aatgtatcgcgcggcgggttgtacaacaaaatgagccggtttggactcaacgttgatacg
ttccgttcttgtgattag
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