Pseudomonas cannabina pv. alisalensis: JGS08_21850
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Entry
JGS08_21850 CDS
T07379
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JGS08_21850 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcab03019
]
JGS08_21850 (pnp)
03016 Transfer RNA biogenesis [BR:
pcab03016
]
JGS08_21850 (pnp)
Enzymes [BR:
pcab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JGS08_21850 (pnp)
Messenger RNA biogenesis [BR:
pcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JGS08_21850 (pnp)
Transfer RNA biogenesis [BR:
pcab03016
]
Prokaryotic type
tRNA degradation factors
JGS08_21850 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QQN21203
LinkDB
All DBs
Position
complement(4869238..4871343)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA
TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKVSGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaagtttcagttcggtcaatcgaccgtaaccctcgagacaggc
cgtatcgcccgtcaagcctctggtgcagtattggtcaccgttgacgacgacgtcagcgta
cttgtgactgtggtcggcgccaaacaggctgacgctggcaaaggcttctttcctctgtcc
gtgcactatcaggaaaaaacctacgctgccggcaagatccccggtggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacctcgcgactgatcgaccgtccgatccgt
ccactgtttccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtgtccacc
agcaagaaaatcgatccggacatcgctgcgatgatcggtacctcggctgccctggcgatc
tccggcattccgttcgacggtccggtcggcgctgcgcgcgttgctttccacgaaagcacc
ggctacctgttgaacccgacttacgagcaactgcaggcttcgagcctggacatggtcgta
gccggtacttccgaagctgttctgatggttgagtcggaagccaaagaactgaccgaagac
cagatgctgggcgctgtactgttcgcccatgacgaattccaggtcgtgatcaacgcgatc
aaggaactggccgccgaagccgccaaacctacctgggactggcagccaaagcctgaagcg
accgcattgctgggcgctatccgtgccgagttcggcgacgcgatctcccaagcttacacc
atcaccgtcaaggccgaccgttatgcgcgtctgggcgagctgaaagatcaggtcgttgcc
aaactcgctgtcgaagacggcagcccgtctgccagcgaagtcaaagccgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccgcgtatcgatggtcgt
gacacccgcactgtccgcccactgaacattgaagtcggcgttttgccgaagactcacggt
tcggcactgttcacccgtggcgaaactcaggcgctggttgtggccacgctgggtactgct
cgtgacgcacagctgctcgacacccttgaaggcgagaaaaaagaccccttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggcggcgcaggtcgtcgt
gaaatcggtcacggtcgtctggctcgtcgcagcgttcaggccatgctgccgggcgctgat
gtgttcccttacaccatccgcgtcgtttcggaaatcaccgagtccaacggctccagctcc
atggcgtcggtctgcggtgcttccctggcactgatggatgcgggcgttccgatgaaggca
ccggttgccggtatcgccatgggtctggtcaaggaaggcgagaaattcgccattctgact
gacatcctgggtgacgaagatcacttgggcgacatggacttcaaagtagccggcacctct
aaaggtgtgaccgcgctgcagatggacatcaagatcaagggcatcaccgaagaaatcatg
gagatcgctctgggccaggccctggaagctcgcctgaacatcctcggtcagatgaaccag
atcatcggtcagtcgcgtaacgaactgtcggccaatgctccgaccatgatcgcgatgaag
atcgataccgacaagatccgtgacgtgatcggcaagggtggcgcaaccatccgtgcaatc
tgtgaagagaccaaggcgtcgatcgatatcgaagacgacggctcgatcaagatcttcggc
gaatccaaggaagcggctgaagcagcgcgtcagcgtgttctgggcattaccgcagaagca
gaaatcggcaagatctacgtcggtaaggttgagcgcatcgtcgatttcggcgcattcgtc
aacattctgccgggcaaggacggtctggttcacatctcgatgctgagcgacgctcgcgta
gagaaagtgaccgatatcctgaaagaaggtcaggaagtcgaagtactggtactggacgtg
gacaaccgcggccgtatcaagctgtcgatcaaagacgtggcggctgcgaaagtatccggc
gtctga
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