Pseudomonas cannabina pv. alisalensis: JGS08_21860
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Entry
JGS08_21860 CDS
T07379
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcab03016
]
JGS08_21860 (truB)
Enzymes [BR:
pcab01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
JGS08_21860 (truB)
Transfer RNA biogenesis [BR:
pcab03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
JGS08_21860 (truB)
Prokaryotic type
JGS08_21860 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
CheY-binding
Motif
Other DBs
NCBI-ProteinID:
QQN21205
LinkDB
All DBs
Position
complement(4871947..4872864)
Genome browser
AA seq
305 aa
AA seq
DB search
MAQVKRIRRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG
EATKFSQYLLDSDKSYETLAQLGKTTTTADSEGDVLLTRPVTVGRDDIEAVLPDFRGQIS
QIPPMYSALKRDGQPLYKLARAGEVVEREPRSVTITRLELLACEGETARLSVDCSKGTYI
RTLVEDIGEKLGCGAYVAELRRTQAGPFTLAQTVTLEELEQVHADGGNEAVDRFLMPSDS
GLLDWPLLKFSEHSSFYWLHGQPVRAPDAPKFGMVRVQDHEGRFIGIGEVSEDGRVAPRR
LIRSE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtggctcaggtcaagcgtatacgccgcaatgtcagcgggatcatcctgctcgacaagcca
ctgggcttcacttccaacgccgcgctacaaaaggttcgctggttgctcaatgccgagaaa
gccgggcacacgggcagcctcgaccctctggccactggcgttttgccgttgtgctttggc
gaggcgaccaagttctcgcaatacctgctcgattcggacaagtcctacgagaccttggcg
caactgggcaagaccaccaccacggccgactccgaaggtgatgttttgctcacgcgtcca
gtgaccgttggtcgcgacgatatcgaagcggttctgccggattttcgtgggcaaatcagt
cagatacctcccatgtactccgcgctcaagcgtgacggccagccactttacaagctggcg
cgtgctggggaagtagtggagcgcgagccccgttctgttactattacgcgcctggaatta
cttgcttgcgaaggcgagacagcgcgcttgtcggtggattgcagcaaaggcacctatatc
cggacgctggtcgaggatattggtgaaaagctcggttgtggtgcttacgtcgcagaactg
cgccgtacccaggccggacctttcacgctggctcagacggtgacgctggaagagctggag
caagtgcatgccgacggcggaaacgaggcggttgaccgtttcctgatgccctcggacagt
ggcttgctggactggccgctgctgaagttttccgagcacagttcgttctactggttgcat
ggtcagccagtgcgcgcgccggacgcgccgaaattcggcatggtacgggtgcaggatcac
gaaggtcgcttcatcggtatcggtgaagtcagtgaagacgggcgcgttgcgccgcgtcga
ttgattcggtcagagtga
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