Pseudomonas cannabina pv. alisalensis: JGS08_22250
Help
Entry
JGS08_22250 CDS
T07379
Name
(GenBank) DUF637 domain-containing protein
KO
K15125
filamentous hemagglutinin
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcab00536
]
JGS08_22250
Glycosaminoglycan binding proteins [BR:
pcab00536
]
Heparan sulfate / Heparin
Microbial pathogens
JGS08_22250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPS
DUF637
PT-HINT
Fil_haemagg_2
Tox-HNH-HHH
Hint_2
Fil_haemagg
DUF5649
Motif
Other DBs
NCBI-ProteinID:
QQN21268
LinkDB
All DBs
Position
complement(4954185..4963430)
Genome browser
AA seq
3081 aa
AA seq
DB search
MDVRQFEFLSRQPSAQVAPRANFMGMPKRLLALLLANVMFWQPVWAQAEGIAVSGTTNTS
VGQAGNGVPVINIAAPNGAGLSHNQYQQYNVDSKGVILNNATNAVQATQLGGNILGNSQL
GGRAASTILNEVTGANASQLNGYTEVAGQAARVIVANPYGVSCNGCGFINTPRVTLSTGT
PVLDANGKLDHFAVDGGSISIDGKGLDASAVDQFDLITRSAKINADIYARQFNVITGAND
VNDDTLATTARAGNAADKPQLAIDSSALGGMYANAIRLVGTEQGVGVKTAGNMAASGGDI
QIDANGHLNMAQASAQGALNVNAPSVEMTGKTYASTVNVRTPGELVNQQSLAARERVEIS
AGKVANAGTIASGIEADNSRNATGDVTISAPVVANTGNIEASRALTVNATQTLNNQGVVQ
GGALSLTSGQITNQGLAARLVGEQSLFISTPAIVNLSGVIRFASGQAASLQLDSLDNRDG
LIQATGGSLAISAGALDNSGGQIDADSLTVASTTLNNRSGLLSARAGDARVTASTTLDNT
GGTVQAQNLLSVAGGTVVNQSGSLLGAGIDVTAPGAQIDNRGGLIQASAGDLAISAGALD
NSAGQIDGNRLIIASTTLDNRSGLLSARAGDANVTARDTLDNTGGTVQAQNLLSVTGGNV
LNQSGRLLAVTGNLGLNATGLDNRSGSVLGAGVNVSAPGAQIDNRGGRIVGDRIDLSAAG
LDNREQGLLAAGAQGMALRFAPTASQAQLLNSSGQIQSNGDLQVSGAWLDNSGGTLLGQS
VLIDAPRLINDSKGAVVSSGGDVTLTVSNLLSNMTGIIDAGSRLVTLSGASELDNQGGSI
RGNQLNLQATTLRNGQQGQLVAGSGGLVYTGSTLDNNGGTLLASGGTTRLELGNGAVSNV
GGTIQGDTVQVTAGSLDTSSDGSKAGMVSSLVDSLTLSVDSLTSDAGKLFARTALVSTGT
TLSNTNGSQLSGDSVNLTAANLINRGGLIESNTTLTLQGGSLDNTAGQLSALGNRVNNSA
GLNNTGTSALRALSADTSTFDFAGSITNQNGHIDVGNTDFALKADALDNRAGRIEHANTG
LLTLDFNRVTGAGGSITALGSGDWNFGAVDGLGNVQLNNALTYTSDSLALLAGDRLASGS
GLTLNLNSLNNAGELLSDGDLTLNLNGDLTNSGRLSAQNLLTLTANNVSQNGGRIGAGSD
TRLNLSGTLDNLGYLTARQNLRIDAAQIDNRGTLGAQGNVNLNAGNAITNSADSLLFSGG
AMALRTGTFSNLYGDVYSRGDLSVANLDGSAAQRFSNLSGTVESEGSIAINAAAVENAKA
EFELGQSIVTGSLDWQCSQHCGGHDSFKRGHITINQTFVESAIKDSPSARLVAGKDLEVQ
ADNVQNRYSLLAANGNLTITANDLLNQGASERTGQNTIKIRAQGRVNTGYWDQMDFIDVP
AFNAAVAAGNFDPVRFEELKSRSTDSRFIEQSNVTVWSDDPQPKYAATLQAGGMVNLNVA
RTVQNGSLRANNTPEILTGTLGEDQTALKVGGLDITINKQATDASAASVASVQPAQRVAA
DGSVQTVFTPVDYSGIPFAAVDPTAGATFQLPKGDYGLFIRNPDPTSNYLIETNPNLTNL
SQFLGSDYLLSRLNINPDSNWRRLGDGLYEQRLIRDAVLAQTGQRFLADGLGSDYDQYRY
LMDNALASKDALNLSLGVSLNGEQVSALTHDIVWMENRIVDGQKVLVPVLYLAQADSRNV
RGNSLIQGRDLNLISGGDLINVGTLRASNNLNVSSGGSIYQGGLVDAGNNLQMTAQDSIR
NAMAGEIRGGRVSLTAVKGDILNDRTAIQVGDGVGMRTVTDTGSTITARENLALNAGRDI
TNYGAMSAGGDLSLTAGNDINLLAKTDSSKNYQIITGGRKSTMTTDVKNLASTVTAGGNV
SIDAARDVNVLASQAKAGNDLTINAGRDFNVSSASDSHNVETRTKHNKTRTVEENGQTTQ
LASELTAGNNFTAQAGRDTKLVASKITAGNEAYLYSGNTLSLLAAQDSTHTLYDMKKKGS
FGAKKAKRDEVTQTTNVGTEIRTAGNLTLASNGDQLYQVAKLNSGKDLTLQSGGAVTFEG
VKDLHDESHTKSKSNMAWFSMKGKGNTDETLRQSELVAQGQTVIQAVNGLKIDVKQVNQQ
TVSQTIDTMVKADPQLAWLKAAEQRGDVDWRQVKELHDSFKYSNSGMGQAAMLAVIIIVT
VVTAGGASALAASAGSAVGAGAGSTMAAATAATATTSATAAGLGNMMATAALTSMASTGA
VSVINNKGNLGVALKDTFGSDSLKNATIGALTAGALNYADSTWFQGASPANGDGAKVIGS
GPVQNPGYSKEWLSWQKAQDAVVRSGTHAVIESGISTAINGGSLKDNLGSALVSQGFDLA
AAAGNKNLGDFADYMDLDPGSAEKIFLHAMLGGAFAAARGGDFKTGAIAAGAAEGLTGIA
NENLGKYLDSRFVTDDQFRVATAQIVGIAAGSLVNGDPNDAAWVAGNVERYNEQLHPRAV
ELIKKEAAQFAADTHISQEDAEQRLAQAAVYYTDKNLNGVMTENGNVPDETTLKYLGTAL
APMAGQYAAPTASDVPTTQAERVYTPPETSTLLNQFAETNPERYADTSINSINFQGAYTG
DLTYDYYRFYDRNIAVPYDAGNSISGGLAGSAQGLGAALSNTVNSAWSLLSSPLQSSEQL
ANGVMSLTKNPLASAWNSLEPAQSKEGLATAYQMQGNNEAAAAIRNQGNVEFGLNLIPVE
RVVSLGKLGTVAKTTDDLYIERLLGEKGPCCFAAGTKVSTPSGDRAIESLKVGDVVWSKP
EKGGKPFAAKILATHQRSDQPIYRLKLKSVRDDGTAAGETLLVTPSHPFYVPAKRDFIPV
INLKPGDLLQSLADGDSENTSSEVESLELYLPVGKTYNLSVDVGHTFYVGELKTWVHNTG
PCDLPEGYFGGKATGEVVPSSPIVTSGATRTGVVRTNAADWRALRDNWDDLGYGQILSTE
NRAAIAKGRTPKVDEPWINAFPEDAGLKGERIPMHHVQGSPLTVPLPDTRHLDAHMPGGF
RYNPGGPGSALPAYPPKKGVD
NT seq
9246 nt
NT seq
+upstream
nt +downstream
nt
atggacgttcgccaatttgaatttctgtcgcgccagccttcggctcaggtggctccgcgc
gccaacttcatggggatgcccaaacgcctgctggcattgctgctggcgaacgtcatgttc
tggcaaccggtctgggcgcaggccgaaggcatcgcggtcagcggcaccaccaacacgtcc
gtaggccaggccggcaatggcgtgccggtgatcaacatcgctgcacccaacggggccggg
ctatcgcacaaccagtaccagcagtacaacgtcgacagcaagggcgtgattctcaacaac
gcgaccaatgccgtacaagccacccagttgggcggcaatattctgggtaacagccagttg
ggcgggcgcgccgccagcactatcctcaatgaagtcaccggcgccaatgccagccagctc
aacggctacaccgaagtggccgggcaggcggcgcgggttatcgttgccaacccgtatggt
gtgagctgcaacggttgcggtttcatcaataccccacgcgtcaccctcagcaccggcacg
cccgtgctggacgcgaacggcaagctcgatcacttcgcagtggacggcggcagcatcagc
atcgacggcaaaggcctggatgcgagcgcggtcgatcagttcgacctgatcacccgttcg
gcgaagatcaacgcggatatctacgccagacaatttaacgtaatcactggcgccaacgac
gtcaacgacgacacgctggcgaccacggcgcgtgccggcaatgctgccgacaagccgcaa
ctggcgatcgattcctcggcgctgggcggcatgtatgccaatgcgatcaggctggtcggc
accgagcagggcgtcggcgtgaagacggcgggcaacatggctgccagcggcggggatatc
cagatcgacgccaacggccacctgaacatggcgcaggcctcggcgcagggcgcgctgaac
gtcaacgcgcccagcgtcgagatgaccggcaaaacctacgcgagcactgtcaacgtccgc
acccccggcgaactggtcaaccagcaaagcctggcagcacgcgagcgggtcgagatcagc
gcgggcaaagtggctaacgcgggcaccatcgcctcgggcatcgaagccgacaacagccgc
aacgcgacgggtgacgtcacgatcagcgcgccagtggtcgccaacaccggcaatatcgaa
gccagtcgcgcgctgaccgtcaatgcgacacaaaccctcaataaccagggcgtggtgcaa
ggcggtgcgctcagcctgaccagtggccagatcaccaatcagggattggcggcgcgcctt
gtcggcgaacagtcgctgttcatctcgaccccggccatcgtcaacctgtctggcgtgatc
cgcttcgcgagcgggcaagcggccagcttgcaactggacagcctcgacaaccgcgacggc
ctgattcaggcaacgggcggcagcctggcgatcagcgcaggtgcgctggataacagtggc
ggtcagatcgacgctgatagcctcacggtcgcttccactacgctgaataaccgttccggt
ctgctgtcggcacgagcgggtgatgcacgggtgacggcgagcaccacgctggacaacacc
ggcggcaccgttcaggcgcagaacctgctgagcgttgccggtggcactgtcgtcaaccag
agcggcagcctgctgggggcgggcatcgacgtgacggcgccgggcgcgcagatcgacaac
cgtggcggcctgattcaggcatcggctggcgacctggcgatcagtgcaggtgcgctggat
aacagtgccggtcagatcgacggcaaccgcctgatcattgcgtccaccacgctcgacaac
cgctccggcctgctgtcggcccgtgcgggcgatgcgaatgtgaccgcgcgcgacacgctg
gataacactggcggcactgttcaggcgcagaacctgctgagcgtcactggcggtaacgtg
ctcaaccagagcggccgcctgctggcggtcaccggcaacctcggtctcaatgccacaggt
ctggataaccgcagcggcagcgtgttgggagcgggcgtcaacgtcagcgcaccgggcgcg
cagatcgataaccgtggcggcaggatcgtcggtgaccgcatcgacctgagtgccgccggt
ctcgacaaccgcgagcagggcctgctggccgccggagcgcaaggcatggccctgcgcttc
gccccgacggcaagccaggcgcagttgctcaacagcagcggccagatccagagtaacggt
gacctgcaggtcagcggcgcatggctggacaacagcggcggtacgctgcttggccagagc
gtgctgatcgacgcgccgcgcctgatcaacgacagcaaaggcgcagtggtcagcagcggc
ggcgacgtgaccctgacagtcagcaacctgctgagcaatatgaccggcatcatcgatgcc
ggcagccgtctggtcacgctcagcggtgcgtccgagctcgacaatcagggtggcagcatt
cgtggcaatcagctgaacctgcaagccaccaccctgcgcaacggccagcaaggccaactg
gtcgcaggcagcggcgggctggtctacaccggcagcacgctggataacaacggcggtacg
ctgcttgcgagtggcggcaccacccggctggagctgggcaacggcgcggtcagcaacgtc
ggcgggacgattcagggcgacaccgtgcaggttaccgccggttcgctggacaccagcagc
gacggcagcaaggcgggcatggtctccagcctggtcgacagcctgaccctgagtgtggat
tcgctgaccagcgatgccggcaaactcttcgccagaaccgcactggtatcgaccggcacc
acgctgtcgaacaccaacggcagccagctcagcggcgacagcgtaaacctcaccgccgcc
aacctgatcaaccgtggcggcctgatcgaatccaacaccacgctcacgttgcaaggcggt
tcgctggacaacaccgcggggcaattgagtgccttgggcaaccgggtcaataacagcgcc
ggcctcaacaacacgggcaccagtgcactgcgggcgctgagcgccgacaccagcaccttc
gattttgccggcagcatcaccaaccagaacggccatatcgacgtcggcaacaccgatttt
gcgctcaaagccgatgcgctggacaaccgcgctggcagaatcgagcacgccaacaccggc
ctgctgaccctggatttcaaccgggtcaccggcgcgggcggcagcatcactgcgctgggc
agcggtgactggaatttcggcgccgttgacgggctgggcaacgtgcagctcaacaacgca
ctgacctacaccagcgattcgctggcgctgctggccggtgaccggctggcgagcggcagc
ggcctgaccctcaacctgaacagcctcaacaacgctggcgaactgctcagcgatggcgac
ctgaccctcaacctgaacggcgacctgaccaacagcggtcgtctgtctgcgcagaacctg
ctgaccctcaccgccaacaacgtcagccagaacggcggccgcatcggcgcgggcagcgac
acgcgcctgaacctcagcggcaccctcgacaacctcggctacctgaccgcccgccagaac
ctgcgcatcgacgcggcacagatcgacaaccgtggcacgctgggcgcgcaaggcaacgtc
aacctcaatgccggcaacgccatcaccaacagcgccgactcgctgctgttcagcggcggc
gccatggcgttgcgcactggcacgttcagcaacctgtacggcgacgtttacagccgtggc
gacctgagcgtggccaacctcgacggcagcgccgcgcagcgtttcagcaacctgtccggc
accgtggaaagcgaaggctccatcgccattaacgccgccgccgtggagaacgccaaggcc
gagttcgaactggggcagagcatcgtcaccggcagcctggactggcagtgcagccagcac
tgcggcggtcacgactcgttcaagcgtggtcacatcaccattaaccagacctttgtcgaa
agcgccatcaaggactcgccgtcggcgcgtctggtcgccggcaaagacctcgaggtgcag
gccgacaacgtgcagaaccgctacagcctgctggcggccaatggcaacctgacgatcacc
gccaacgacctgctcaaccagggcgcttccgagcgcaccgggcagaacaccatcaagatc
agggcgcagggccgggtcaacaccggctactgggatcagatggatttcatcgacgtcccg
gcctttaatgccgccgtcgcagccggcaacttcgacccggtacgctttgaagagctgaag
agccgctctaccgacagccgcttcatcgagcaaagcaacgtcaccgtctggagcgacgat
ccgcaacccaaatatgccgccaccctgcaagccggtggcatggtcaacctgaacgtcgcg
cgcaccgtgcagaacggttcgctacgggccaacaacacacccgaaatactcaccggcacc
ctcggcgaggatcagaccgccctcaaggtcggcgggctcgacatcaccatcaacaagcag
gccaccgatgccagcgccgccagcgtggcgtctgtccagccggcgcagcgcgtggctgcc
gatggcagcgtgcagaccgtgttcaccccggtggattacagcggcattccgttcgccgcc
gtagacccgaccgcaggcgcgaccttccagctgccgaagggcgactacgggctgttcatc
cgcaaccctgatccgaccagcaactacctgatcgagaccaacccgaacctgaccaacctg
tcgcagttcctcggctcggattacctcctcagccgccttaacatcaaccccgacagcaac
tggcgtcggctgggtgatggcctttacgaacagcgcctgatccgcgacgcggtgctggcg
caaaccggccagcgcttcctcgctgacggcctgggcagcgactacgatcagtaccgctac
ctgatggacaacgccctcgccagcaaagacgccctgaacctcagcctcggcgtctcgctg
aacggcgaacaggtcagcgccctgacccacgacatcgtgtggatggaaaaccgcatcgtc
gacggccagaaagtcctcgtccccgtgctgtacctggcccaggccgactcgcgcaacgtg
cgcggcaacagcctgattcaaggccgtgacctgaacctcatttccggcggcgacctgatc
aacgtcggcaccctgcgcgccagcaacaacctcaacgtcagcagcggcggcagcatctat
cagggcggcctggtcgacgccggcaacaatctgcagatgaccgcgcaggacagcattcgc
aacgccatggccggggaaatccgtggcgggcgtgtcagcctcaccgctgtcaaaggcgac
atcctcaacgaccgcacggcgatccaggtcggtgacggcgtcggcatgcgcactgtgacc
gacactggcagcaccattaccgcccgtgaaaaccttgccctcaacgccggtcgcgacatc
accaactacggggccatgagcgccggtggcgacctgtcgctcacggccggcaacgacatc
aacctgctggccaaaaccgacagcagcaagaactaccagatcatcaccggcggtcgtaaa
tcgaccatgaccaccgacgtcaaaaaccttgcgtcgacggtcactgccggtggcaacgtg
agcatcgacgcggcgcgcgacgtcaacgtcctcgccagccaggccaaggccggcaacgac
ctgactatcaacgccggccgcgacttcaacgtcagttcggccagcgactcgcacaacgtc
gaaacccgcaccaaacacaacaagacacgcaccgtcgaagaaaacggccagaccacccag
ctcgccagcgaactgaccgcaggcaataacttcaccgcccaagccgggcgcgacaccaaa
ctcgtcgccagcaagatcaccgccggcaacgaagcgtacctctacagcggcaacactctg
agcctgctcgctgcgcaggacagcacgcacaccctgtacgacatgaagaaaaagggcagc
ttcggggccaaaaaagccaagcgcgacgaagtcacccagaccaccaacgtcggcaccgaa
atccgcaccgcaggcaacctgacgttggcaagcaatggcgaccagctgtatcaggtcgcc
aagctgaacagcggcaaggacctgaccctgcaaagcggcggcgcagtgaccttcgaaggc
gtgaaagacctgcacgacgagagccataccaagagcaaaagcaacatggcctggttctcg
atgaagggcaaaggcaacaccgacgaaaccctgcgccagagcgaactggtcgcccagggc
cagaccgtgatccaggccgtgaacgggctgaagatcgacgtcaagcaggtcaaccagcaa
accgtcagccagaccatcgacaccatggtcaaggccgacccgcaactggcgtggctcaaa
gcggccgagcagcgcggcgatgtggactggcggcaggtgaaagagcttcacgactcgttc
aagtacagcaactcaggcatgggccaggcggcgatgctggcggtgatcatcatcgtcact
gttgtgacggcgggtggggcgagtgcgctggcggcttcggcgggcagtgcagtgggagcc
ggggccggtagcaccatggctgctgcaacagcggccaccgccaccacctcggccaccgcc
gcaggcctgggcaacatgatggccaccgctgcgctgacctccatggccagcaccggtgcg
gtcagcgtcatcaacaacaaaggcaatctgggcgtcgcactgaaagacaccttcggcagc
gacagcctgaaaaacgctaccatcggtgcactgactgctggcgcgttgaactacgcagac
agcacctggttccagggcgcgagcccggccaatggcgacggtgcgaaagtcatcggttcc
gggccggtgcaaaaccccggctactccaaggaatggctcagctggcagaaagcgcaggac
gcggtcgtgcgcagcggcacgcacgcggttatcgaaagcggcatctccaccgccatcaac
ggcggtagcctgaaagacaacctgggctccgcgctagtgtcgcaagggttcgatctggct
gccgctgcgggcaacaaaaacctgggcgactttgccgactacatggacctggaccccggc
tcggcagagaaaatctttctgcacgccatgctgggcggcgcatttgcagcggctcgcggc
ggcgacttcaagaccggcgccatcgctgccggtgcggctgaggggttgacggggatcgcc
aacgaaaacctcggcaagtatctggacagccgcttcgtaacggatgaccagttccgggtg
gcgacggcgcagatcgtgggtatcgcggcgggttcattggtcaacggtgatccgaatgat
gcggcgtgggtggcggggaatgttgagcggtataacgagcaactgcacccacgggccgtt
gagctgattaaaaaagaagcggcacaatttgctgccgacacccacatcagccaggaggac
gccgagcagcgtctggcgcaagccgcggtctactacaccgacaaaaacttgaacggggtg
atgaccgaaaacggcaacgtgccagacgagaccacccttaaatacctgggcacagcattg
gcccctatggctggccagtacgctgcgccaactgcatccgatgtaccgaccacacaagcc
gagagggtatacaccccgcctgaaacgtccacgctgctcaaccagtttgcggaaaccaat
ccggaaaggtacgccgacacttcaatcaactcgatcaactttcagggcgcttatacaggc
gacctgacatacgactactaccgcttttacgacaggaacatcgccgttccttacgacgcg
ggcaattcaatcagtggcgggcttgccggtagcgcgcaaggcttgggcgcagccctttcc
aacacagtgaattcggcttggtcgctactgagcagtcctctgcaaagcagtgaacaactg
gccaatggcgtgatgtcactgaccaaaaaccctcttgcgtccgcatggaacagcctggaa
cctgcccagagcaaggaaggactggcaaccgcttaccagatgcagggcaataacgaagcg
gccgcggcgatccgaaatcagggcaatgtggagtttgggctgaacctgataccggtagag
cgtgtagtctcgctgggtaaattgggaacggtcgccaaaacgacggacgacctctacatc
gaacgtcttcttggcgaaaaaggcccgtgctgctttgctgctggcaccaaggtctcgacc
ccgagcggcgaccgggctatcgaatcgctcaaagtcggcgatgtggtgtggagcaagcca
gaaaaaggcggcaaaccgtttgccgcaaaaatcctggccacccaccagcgttccgaccag
ccaatctaccgcctcaaactgaaaagcgtccgcgacgacggcacagcggcaggcgaaacc
ctgttggtgacaccaagccatccgttctacgttccggcaaagcgcgacttcatcccggtc
atcaacctgaaacccggagatctgctgcaatcactggctgatggcgactcggagaatacg
tcgtctgaggttgaatcgctggagctgtacctgccggtgggcaagacgtacaacctttcg
gtggatgtggggcacacgttctacgttggcgagctgaagacgtgggttcataatactggg
ccgtgtgatttgcctgaggggtattttggagggaaagcgactggcgaagtcgtgccttcc
tcgcctattgttacttctggtgcgactcggacaggtgttgttcgtacgaatgccgcagac
tggagagcattgcgtgataattgggatgaccttgggtatggtcaaatcttaagtactgaa
aatcgggccgcgattgctaaaggacggacaccgaaagtcgacgaaccatggattaatgct
tttcctgaagatgcaggcttaaagggcgagagaattcccatgcaccatgtccaaggttcg
ccacttactgtgccgctgcctgatacacggcatttggatgcgcatatgcctggagggttt
agatataatccgggcggtccagggtctgctctcccggcataccctccgaaaaaaggagtt
gattaa
DBGET
integrated database retrieval system
