Pseudomonas cannabina pv. alisalensis: JGS08_22495
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Entry
JGS08_22495 CDS
T07379
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JGS08_22495 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_22495 (recD)
Enzymes [BR:
pcab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JGS08_22495 (recD)
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JGS08_22495 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
AAA_22
SH3_13
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
AAA_16
TraI_hel_assoc_N
AAA_17
PhoH
T2SSE
AAA_28
AAA_5
nSTAND3
DEAD
NTPase_1
NACHT
Motif
Other DBs
NCBI-ProteinID:
QQN21314
LinkDB
All DBs
Position
complement(5027872..5029983)
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AA seq
703 aa
AA seq
DB search
MIRTFDDLLPTALDDAGLAELSPLTRVDDLLMLLERWVERGWLRALDRAFVAFLGELDPQ
ADPLVLVAAAFTSHQLGHGHVCLDLYETLKEPDFALSLPPEGDQQDGAMLLPSQLLAALD
GAAWCQALARSVLVAEVGDSSAEALQKPLVLAERRLYLRRYWTYERRIAAALRQRLAQPD
TPPADLPQRLTALFGAADSAPDAVIDWQKLACALATRRAFSIITGGPGTGKTTTVVRLLA
LLQAPAVQSGQPLRIRLAAPTGKAAARLTESISQQVQSLDVSAEVRQKIPSEVTTVHRLL
GSRPGTRHFRHHAGNLLPLDVLVVDEASMIDLEMMANLLDALPSHARMVLLGDKDQLASV
EAGAVLGDLCRDAEEGFYSPETQAWLEAVSGEDLSKGALQPGDAQRHPLAQQVVMLRHSR
RFGQGSGIGQLARLVNQQQDKQARALLSAGSHTDLFALALKGEQDLKFERLVLDGLGKGE
QGPQGYRHYLNVLAAERPAQGSALDDACWTVWARSVLNAFDAFQLLCAVRKGPWGVEGLN
QRITHALFSAGLIESEQQWYEGRPVLMTHNDYGLGLMNGDIGITLRLPERDGDGDGDGDG
KQVLRVAFPRNDGTGGVRFVLPSRLNEVETVYAMTVHKSQGSEFAHTALILPEALNPVLT
KELIYTGITRAKHWFSLIEPRQGIFEEALRRKVKRLSGLMLGL
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcacgtttgacgacctgttgcccaccgcgctggacgatgccggccttgccgag
ctgagtccgctgacccgtgtcgacgacctgctgatgctgctcgagcgctgggtcgagcgc
ggctggttgcgtgcactggaccgagcgttcgtcgcgtttctcggcgaactcgatccacag
gccgatccgttggtgctggtggcggcggcgtttaccagccatcagttggggcacggccat
gtctgccttgacctctacgagacactgaaagaaccggacttcgccttgtcgctgccgccc
gaaggcgatcagcaagacggcgcgatgctgctgccctcgcaactgctggctgcgctggac
ggcgcggcgtggtgtcaggcgctggcgcgcagtgtgctggtcgcggaagtcggagactca
agcgccgaagcgctgcaaaaaccattggtgctggcggagcggcgtttgtacttgcgccgc
tactggacctacgagcgccgtatcgcggcggccctgcgtcagcgactcgcccaacctgac
acgccgccagcagatctgccgcagcgcctgaccgcgttgttcggagctgctgactctgcg
ccggacgccgttatcgactggcagaaactggcctgcgctttggcaacccgtcgggcattc
agcatcatcaccggcggccccggcacgggcaaaaccaccaccgtggtgcgcctgctggca
ttgcttcaggcacctgccgtgcagagcggccagccattgcgcattcgcctcgcagccccg
accggcaaggccgcggcacgtctcaccgagtccatcagtcaacaagtgcaaagcctggac
gtcagcgccgaggtgcggcagaaaatccccagcgaagtgaccaccgtgcaccgcttgctg
ggcagtcgtcccggcactcgccacttccgccaccacgcgggcaacctgttgccgctggac
gtgctggtggtcgacgaagcatcaatgatcgacctggaaatgatggccaatctgctcgac
gcactgccatcccatgcgcgcatggttttgctgggcgacaaggatcagctggcctccgtg
gaagcaggagccgtgctgggggatttgtgccgcgacgctgaagagggtttctacagtcca
gaaacccaggcctggctggaagccgtcagcggcgaagatctgagcaaaggtgcgctgcaa
ccaggcgacgcgcaacgacatccgttggcacagcaagtggtcatgctgcggcactcgcgc
cgcttcggccaaggcagcggcattggccaactggcccggctggtcaaccagcagcaggac
aagcaggcgcgcgccttgctgtcggcaggcagccacaccgatctgttcgccctggcgctc
aagggcgagcaagacctcaagttcgaacggctggtgctggacggtcttggcaagggtgaa
caaggtccgcagggttatcggcattacctcaatgtgctggctgccgagcgtcccgcgcag
ggttcggcactcgacgacgcgtgctggacggtctgggcccgctcggtgctgaacgcgttc
gacgcattccagttgctgtgcgccgtgcgcaaagggccgtggggcgtggaaggcctgaac
cagcgcatcactcacgcgctattcagcgctggcctgatcgaaagcgaacagcagtggtac
gaaggccgcccggtgctgatgacccacaacgattacggcctcggactgatgaatggcgac
atcggcatcaccctgcgcttgcccgagcgcgatggcgatggcgatggcgatggcgatggc
aagcaagtcctgcgtgtcgctttcccgcgtaacgacggcactggcggcgtgcgcttcgtc
ctgcccagccggctcaacgaagtggaaaccgtatacgccatgaccgtgcacaaatcccaa
ggctcggaattcgcccacactgccctgatcctgcccgaagccctcaacccggtgctgacc
aaggaactgatctacaccggcatcacccgcgccaaacactggttcagcctgatcgaaccc
cgccagggcatcttcgaagaagccctgcgccgcaaggtcaaacgcctgagtgggttgatg
ttgggtttatga
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