Pseudomonas cannabina pv. alisalensis: JGS08_25850
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Entry
JGS08_25850 CDS
T07379
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JGS08_25850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcab03019
]
JGS08_25850
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_25850
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JGS08_25850
Messenger RNA biogenesis [BR:
pcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JGS08_25850
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JGS08_25850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QQN21929
LinkDB
All DBs
Position
complement(5782821..5784755)
Genome browser
AA seq
644 aa
AA seq
DB search
MHQRLEHVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVS
PLLALIQDQLAFLHRHGISAASIDSAQSREDVADVMGRARSGELKILMISVERLKNERFR
NFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQALLLTATATPQVIIDM
QDKFAIAPEDVITTGFYRANLHLWVTPVSGRDKRRRLVEWLNGKRGQPTIVYVTLQKTAE
YIAAHLEQNGLPASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIARVLDDLL
NARHDGQWEFLLGPLADLSNIRQLPLKTLLVQLELRGIIAPRYAYFAEYRFKFLLQPADL
MARFEGERQQFVQALINTSSRARTWATVDFDAMYQQYGAERGRVVKALDYFQEKGWIELE
SKQMTEVYSLLRSDFDPQALSTELHDYFAHHEATEVARIHAMLEVFSSDQCLTHRLALYF
GDHNAPEQCGHCSVCHGEVAHLPEPPALEPLANRDFQQLCGDFIHKHQDYTGQPPSAECL
TRFLCGISVPLFTKLKARATTGFAVLEDYPYAQVRAWVQGMSDK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcgtctcgaacacgtattcggttacacacagttccggcctgggcaggaggct
gcaatcagtgctgtgctggccggacgctcggctgcggcgatctttccgacgggttctggc
aagtcgctatgttaccaattgcccgcgctgatgttgccgcatttgacgctggtggtctcg
cctttgctcgcgttgattcaggatcaactggcctttctgcaccgccatggcatttcggcg
gcgagcatcgattcggcgcaaagccgcgaagatgttgctgacgtcatgggcagggcgcgt
tccggcgagctgaagatcctgatgatctcggtcgagcgcctcaagaacgagcgcttccga
aacttcattgcgcaagtgccgatctccttactggtggtcgacgaagcgcactgcatctcg
gaatgggggcataactttcggcccgattacctcaagctgccggactaccagcgtgagttc
aacatcccccaggccttgctgctgacggcgaccgccacgccgcaagtcattatcgacatg
caggacaagttcgccattgcccccgaggacgtgatcaccacagggttttatcgcgccaat
ctgcacctgtgggtcacaccggtcagcgggcgtgacaagcggcgacggctggtcgagtgg
ctcaatggcaagcgcgggcagccgaccattgtgtacgtgaccctgcaaaagaccgccgaa
tacattgccgcgcaccttgaacagaatggtctgcccgccagcgcctatcacgccgggctg
cccaacgatcaacgcgagtcgatccagaagcgcttcatgggcggcagcctgaactgcatc
gtggcgaccatcgcgttcgggatgggcatcgacaagagcgacattcgcaacgtggtgcat
ttcgacctgcccaaatccatcgaaaactacagtcaggaaatcggccgggcagggcgcgac
ggggctgcatccgattgtctggtgctggccaaccgcgacagcctcaacgtgctggagaac
ttcgtgtatggcgacacgcctgagcgcgagggcattgcacgtgtgctggacgacttgctc
aacgcccggcacgacggccaatgggagtttctgctcgggccgctggccgatctgagcaac
attcgccagctgccactgaaaaccctgctggtgcaactggaactgcgcggcatcatcgcg
ccgcgttacgcgtattttgcggaataccgtttcaagttcctgctacagcccgctgacctg
atggcgcgtttcgaaggcgagcgacagcagttcgtgcaggccctgatcaacacgtccagc
cgggccaggacctgggctaccgtcgatttcgatgcgatgtaccagcaatacggcgccgag
cgcgggcgcgtggtcaaggcgctggattactttcaggaaaagggctggatcgagcttgaa
agcaagcagatgaccgaggtgtacagcctgctgcgcagcgattttgatccgcaggcgctg
agcactgaactgcatgactatttcgctcaccacgaagccaccgaggtggcacgcattcac
gccatgctggaagtgttctccagcgatcagtgcctgacccatcgtctggccctttatttt
ggcgaccataatgcccctgagcagtgcggacattgttcggtctgccatggcgaagtcgcc
catctgccagagccgcctgctctggaacctctggcgaaccgggactttcagcaactgtgt
ggcgactttatccacaagcaccaagactacaccggccagccgccaagcgctgaatgcctg
acccgcttcctgtgcggcatcagcgtgccgttgttcaccaaactcaaggcccgtgcgacc
acagggtttgccgtgttggaggattatccgtatgcgcaggtgagggcgtgggtgcagggg
atgtctgacaaatga
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