Pseudomonas cannabina pv. alisalensis: JGS08_26365
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Entry
JGS08_26365 CDS
T07379
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03420
Nucleotide excision repair
pcab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JGS08_26365 (uvrD)
03430 Mismatch repair
JGS08_26365 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_26365 (uvrD)
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JGS08_26365 (uvrD)
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JGS08_26365 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JGS08_26365 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQN22013
LinkDB
All DBs
Position
5906927..5909110
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVL
SVTFTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDD
QQRLVKRVMRELGLDEQRWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYE
AACQRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFPDTEVIRLEQNYRSTASILKAANALIV
NNSGRLGKELWTDVGDGELINLYAAFNEYDEARYVVETIESALKTGISRNDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLH
LMTQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESDEELTPLAAFLGHA
SLEAGDTQAQEHEESIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPTLIQEVRLSNSVSRPFGGTP
KFNSSSLFNGTGIPETEFTMGQRVQHAVFGEGVILNFEGAGAQARVQVNFAEGSKWLMMG
YAKLVAL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctctcttcttttgaattccctcaacgatgcccaacgtcaggccgta
gcggcctcactcggtcgtcagttggttctggccggtgctggctccggcaaaacccgtgtg
ctggtgcatcgcatcgcctggctgatgcaggtcgagcaagcctccccgcattcggttctg
tcggtgacgttcaccaataaggctgcggccgagatgcgccaccgcatcgagcaactgatg
ggcatcagcccggccggcatgtgggtcggcactttccacggtctggcgcaccgcttgttg
cgtgcgcactggcaggaagcggggctggtgcagaccttccagattctcgacagcgatgac
cagcaacgcttggtcaaacgcgtaatgcgcgagctgggcctggacgagcaacgctggcct
gcgcgccaggcgcagtggttcatcaacggtcagaaagatgaaggcctgcgcccgaaacat
attcaggccagcggcgatctgtttctgaccacgatgaaaagcgtttacgaagcctacgag
gccgcctgccagcgagcgggcgtcatcgacttctccgaactgctgctgcgcgccctggac
ctgtggcgcgataatccgggcctgctcgcgcattatcagcgccgtttcaggcacgtgttg
gtcgacgagttccaggacaccaacgctgttcagtacgcctggttgcgcctgctcgcccaa
ggcggcgacagcctgatggtggtcggcgacgacgatcagtccatctacggctggcgtggt
gcgaagatcgagaacatccaccagtactcgtccgacttcccggacaccgaagtgatccgc
ctggagcagaactaccgctccacggcgagcatcctcaaggccgccaacgcgctgattgtc
aacaacagcggtcgcttgggcaaagagttgtggacggatgtcggtgacggcgagctgatc
aatctgtatgccgccttcaacgaatacgatgaagcacgctatgtggtcgagaccatcgaa
agcgcgctgaaaaccggcatctcgcgcaacgacatcgccattctgtaccgctccaacgct
cagtcgcgcgtgctggaagaagccctgctgcgtgaacgcattccgtaccgcatctacggc
gggcagcgtttcttcgagcgcgccgagatcaagaacgccatggcctatatgcgcctgctg
gaaggccgtggcaacgacgcggcgctggagcgagtgatcaacgttccggcacgcggcatc
ggtgaaaaaaccgtcgaagcgattcgtgagcatgcgcgtcatgccgacgtttcgatgtgg
gaagccatgcgcctgctggtcgccaacaagggcctgaccgggcgcgcagcgactgccttg
ggcgggtttatcgagctgatcgagaacctgtcggcgaaggtcatggagatgccgctgcac
ctgatgacccagacggtcatcgagcaatccgggctgatcacttatcacgagcaggaaaaa
ggcgagaaaggccaggcccgggtagaaaaccttgaggaactggtcagcgccgcacgcgcc
ttcgagaatcatgagagcgatgaagaactgacgccactggcggccttcctcggccatgcc
tcactggaggctggcgacactcaggcgcaggagcatgaggagagcatccagctgatgacc
ttgcacagcgccaagggtctggaattcccgcatgtgtttctggtgggcatggaggaaggg
ctattcccgcacaagatgagcctggaagaaccgggccgtctggaagaagagcggcgcctg
gcctatgtcggcatcacccgcgcgatgaaacagctggtgatgacctacgccgagacgcgt
cgcctgtatggcagtgagacctacaacaaggtctcgcgtttcgtacgcgaaataccgcca
acgctgattcaggaagtacgcttgtccaacagcgtcagccgcccgttcggcggcaccccg
aaattcaacagcagcagcctgttcaacggcaccggcattccagaaaccgagttcaccatg
ggccagcgcgtccagcatgcggtgttcggcgaaggcgtcatcctcaacttcgaaggcgcc
ggtgcccaggcacgcgtacaggtcaacttcgctgaaggcagcaagtggctgatgatgggg
tatgcgaagctggtggcgttgtag
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