Pseudomonas cannabina pv. alisalensis: JGS08_26860
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Entry
JGS08_26860 CDS
T07379
Name
(GenBank) hemagglutinin repeat-containing protein
KO
K15125
filamentous hemagglutinin
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcab00536
]
JGS08_26860
Glycosaminoglycan binding proteins [BR:
pcab00536
]
Heparan sulfate / Heparin
Microbial pathogens
JGS08_26860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fil_haemagg_2
TPS
Fil_haemagg
Motif
Other DBs
NCBI-ProteinID:
QQN22095
LinkDB
All DBs
Position
complement(6018905..6028231)
Genome browser
AA seq
3108 aa
AA seq
DB search
MDVHQLALLARQPSAALTERPRFWGIPKRGLALILANALFWQPLLVQAEGIAVSGTTNTS
VGQAGNGVPVINIAAPNGAGLSHNQYQQYNVDSKGVILNNATNATQNTQLGGIIVGNKNL
GGTAARTILNEVTGANASQLNGYTEVAGQSARVIVANPYGISCNGCGFINTPQVTLTTGK
PVLDANGQLNRFNVQGGGVSIDGVGLNADNVDQFDIITRSAKINAELHAKRLNIIAGRND
VDAQTLNATPLPDDGSAKPELAIDSSALGGMYAGAVRLVGTEAGVGVRLAGDLAASGGDI
NIDANGKLTMNQTAASGNIVAKARDITVTGPAYASSQLTLNASGTLTNNSDLVAAQAVNI
DAAQLSNTGVIESGINADNTRNSTGTLSLRARNIVNQGTLAASSTLSAIVSETLDNRAGK
IVSQGTLTASVARLDNSNGQLSSAGEQLVTASESLDNSAGQLVTDGALTVSSARLNNNGG
TLSAAQALNINSAQLDNSATSRITSGAALTLNTTVLNNLGGLISGWQGVTLTGDRFDNSA
GTLVSNTDMTLALNGAFTNTNGTVVSTSGMTLDLPGALNNSNGTIVSGADLLLRRGGTVT
NNNGRLTSQGLMTLFANTLDNSNNGTLAGSAVSITASGNVLNGNNGLIDSRTGTLGLNAG
ALNNDGGIVQSANTLTLATGNGATSNVGGSLIAQSGDLSITGASVDNSAGVLASLAGNVN
TDLAGVLRNGLSNAKGGVIQGQRLLLTARGGIDNNGGSIAAQQGDALIQASTFDNRNGAL
SATGLVQVRGDSFDNSGDQGGQVAGRDIDFDLSGALNNRQGIIESDNSLLLKAASLDNTQ
GQLRALGSGGSTALTLSGALDNTRGTLESASSDLQFALGSLVNTDGSILHVGQGALGLSL
ALLQNAGGSISTNGTLALTGDSWTNSTTLQAANLDLNIGSFTQLGGGQLLAANSFIGRGG
NWTNDGRIASDGTLDVRLTGAYNGAGSMTSLGASTLKAAQLNLTDANARLASGAAGVIDI
DGILNNSGRITGNTDLQVNAGTLNNFGTLGAGGNLSVSTPTLLNQNALIFSGGNTSLLVN
DFTNQYADVYSMGNLQISRDAAGAFANSIVNRSATLTSDGSMLLAANTVQNIRDVLSVKD
SGIYSARIDELSCSTPGTGNLDCDGGKEHHVWKIQQLEKLEVTAASAASSITAGGNMTLA
GGDFLNSSSSLASGGALTATFNNFNNVGVVTGQTENDRIFVSRRTRDDDRWDEDARLFNL
RYSQDSPRYDPNNLGGLQAAMSNFIAITERDVPELETNRQLASDATTYAAIIQAGGPVSI
TAGNNFDNSVVRGGFTYVSGGTRTDTTAPGTDYATVVTLNRQLPPDLAQQQVNPTALPGF
SLPTGQNGLFRLSDTQNGASLPGSGAQLLSAATAAQPHPYLIETNPALTDLRQFLSSSYL
LDTVGYNPDAAWKRLGDGYYEQRLIQQAVIARTGQRFIDGLTSDEAMYKYLMDNAIASKS
TLDLSVGVALTGEQVAALTHDIVWMEDQVVRGEHVLVPVLYLAQANNRLANNGALIQGGD
LSLIAGNNLTNVGTLRATNTLNARAGNSLINEGLIQTNERLNLSSGNDLINRAGGVVAGR
DVTLSSVNGDVSNERSVTRHQSAVGNSTWRRDFANNAARVEAANDLTVSAGRDINTSGAL
QAGRDVTLLADRDVAINAAQLQQGRTDGPNHVRTSTTQLGASVNAGQDVAVQAGRDVGVT
ASRVDAGRDMALRSAGNIALESAANQSEYVSRSKKTKLETRTVNQQASDLNAGGNLSADA
GQNLDIVASRVTTGGSVALDAAQDMTIASAKDENSYFYSKKSKSSFGRSSSKQQESYDST
NMASEVNAGQDLTVNASKAADGSVNINGGRDVSVIGSKLSAGNDLVLGATNDVAVLSGVE
EHGAYSKKTKSGFLGLSKSGKSQLKTSATQVGSELNAGDDVVLASGKDVRLRASEIGAGN
DVDVRAGLLDKTGDINLVSANDQAYSRSEEYKKKTGLSVSGGFLSISSAKEAGRVAQSST
SVGSQVNAVRDADLQAERDINVIGSSINAGGNVRLNAGQDVNVLAAQNSTSNQDWEKNRQ
TGIGVSSNANGVTFFAGVDRTKEKNRLEQQTAAASQIRAGENLAVDARRDINQVGSDLEA
ANNVDLTAGRNIKIDAARESQLIEQQRESSRNGLSLSVNHNYGSTRDAVSGAGKGDDAVS
KGSSTLRAVDGVSQFLSGPTADAKLGNSKQSTSQQVIEETNRASTLSAGNDVNLSANNAV
QVTGGQLQAGRDINVTGQDVTLDAARGRYSQETRERQSWGGIHGGTSGGFKLGIGGSNGI
ASGDQSQESSTVTALQAGRDINLQARNDLNLIGTQAQAQRNIDLRAGNNLNIRAAQNNSS
TDNTRKNGGGEAGIAVGPGGIGVYASVNIGKGDLEREGLQQQEAYLYAGNRLGFTSGQDT
NIGGATLRGNDVVGRVGRDLNVTSLANTGKVEGKEYDLSATVVVGFGGSVSGSAGYGRTN
GSTNWIEQQTSITGKDQVDIRTQNHTQLDGALIASDTGNLKLDTNTLGFSDIAGKDKEHG
YYLNVGGSYGNSSGAVQDPSQVSKGKQGQNGWSVEGWNYEKDRQQVVRGTVGAGDVVVRG
DAAAGKDSTAGLNRDVDKAYEITRDDEHRTDLYVTKSSVEAASQPVVTAKQWTNQLLTYD
DTARQNYENASRDLTRAVNKIESTLGRQMDTGASKLMGADFAENTMDSLLQGGMTRDQAM
KTMADPQFQESVVAEIARLAGIDLNPVEDLDKTLQEDNRPNSPGAMELPASFVNPTDKEQ
LTVAQDTLRSMASINQYIQEHPAQQEAVSVLVAVAQGPKGLVQLAVYNAVSETPLGQSLG
QKVAEYSDALGEQVASAMEGKPLNKDDNSELYLIGGGGLAAGLLTGMLASGKFSGKSKVV
TAEMRADPYHPDWKNYTGKDRGVGADVVKGGEGGKATGEAATQIPGRVQSRVNIANGRTE
TTPLRDNGNPVSAGFDHVIDGHFNREISNSRSVFTIAPDELKGILQSSSVVKSPVVALPD
GQFVRTVDVGRAIGTTTLKDGGIPTSVIKVFTDKAGNLITTFPVKVGN
NT seq
9327 nt
NT seq
+upstream
nt +downstream
nt
atggacgttcatcaactggctctgctggcacgtcagccttctgctgccctgaccgaacgc
ccacgtttctggggtatccccaaacgcggcctcgcgctgatcctcgccaacgcactgttc
tggcagccgctgctggtgcaagccgaaggcatcgcggtcagcggcaccaccaacacctcg
gtaggccaggctggcaacggcgtgccggtgatcaacatcgccgcgcccaacggtgccggg
ctgtcgcataaccagtaccagcagtacaacgtcgacagcaaaggcgtgattctcaacaac
gcgaccaatgccacccagaacacccaactgggcggcattatcgtgggtaacaagaatctt
ggaggcactgccgcccggacgattctcaacgaagtgaccggtgccaacgccagccagctc
aacggttacacggaagtcgcggggcagtcggcgcgggtgatcgtggccaacccctatggc
atcagttgcaacggctgcggctttatcaacactccgcaagtcacgttgaccaccggcaag
ccggtgctggacgccaatggtcagttgaatcgcttcaacgtgcagggtggcggcgtgtcc
attgatggcgtaggcctgaatgcggacaacgtcgatcagttcgacatcatcacccgcagc
gcgaaaatcaacgccgagctgcatgccaaacgcctgaacatcatcgccggccgcaacgac
gtcgatgcgcagacgctcaatgccacaccgctgccagacgacggcagcgccaaacccgag
ctggcgatcgactcctcggcgctgggcgggatgtacgccggggcggtgcggctggttggc
actgaggcaggcgtcggcgttcggcttgccggagacctggcggccagcggtggcgatatc
aatatcgatgctaacggcaagctgaccatgaatcagaccgcagccagcggcaacatcgtt
gccaaggctcgcgatatcaccgtcaccggtccggcctacgccagttcacagctgacgctc
aatgcgtcaggcacactgaccaacaacagcgatctggtggccgctcaggcggtgaatatt
gatgccgcgcaactgagcaacaccggcgtcatcgaatccgggatcaacgccgacaacaca
cgcaacagcacgggcaccttgagcctgcgtgcccgcaacatcgtcaatcagggcaccctg
gccgccagcagcacactcagcgccatcgtcagcgaaacgctggataaccgcgccgggaag
atcgtttcgcaaggcacgctgacggcaagcgtggcgcgcctcgacaacagcaacggccag
ctctccagcgccggtgagcaactcgtcaccgccagcgaaagcctggacaactccgccggg
caactggtgactgacggcgcgctgaccgtaagcagcgcacgtctgaacaacaacggcggc
acgctgagcgcggctcaggccctgaacatcaattcggcacagctcgacaacagcgcgacc
agccggatcaccagcggcgcggcactgacgctgaacaccaccgtactcaacaaccttggt
ggcctgatttccggctggcagggcgtgaccctgaccggcgaccgcttcgacaacagcgca
ggcacgctggtcagcaataccgacatgacactcgccctgaatggcgccttcaccaatacc
aacggcaccgtggtcagcacttcaggcatgacccttgacctgccgggcgcgctgaacaac
agcaatggcacgattgtcagcggtgcggatctactgctgcggcgcggcggcacagtgacc
aacaacaatggtcggctgaccagtcagggcctgatgaccctgtttgccaataccctggat
aacagcaacaacggcacacttgcaggcagcgcggtctcgatcaccgcctctggcaacgtg
ctgaacggcaacaacgggctgatcgacagccgcaccggcacgctcgggctgaacgctggc
gcgctgaacaacgacggcggcatcgtgcaaagcgccaacacactgacgttggcgaccggc
aatggcgccaccagcaacgtgggtggcagcctgatcgcgcagtcgggtgacctgtcgatc
accggtgccagcgtcgacaacagcgcgggtgtgctggccagtctggccggaaacgtgaac
accgaccttgccggcgtgctgcgcaatggcctgtcaaacgccaaaggcggtgtcatccag
ggccagcgcctgctgctgaccgcccgtggtggcatcgataacaacggcggcagcatcgcc
gcccaacaaggcgacgcactgattcaggcgtcgaccttcgataaccgcaacggcgccttg
tcggccactggcctggtgcaagtgcgcggcgacagcttcgataacagcggtgaccaaggc
ggccaggtggcaggtcgcgatatcgatttcgacctgtccggcgcattgaacaaccgtcag
ggcattatcgaaagtgacaacagcctgctgctcaaagcagccagcctggacaacacgcaa
ggacaactgcgcgcgctgggcagcggtggttccaccgcactgaccctgagcggcgcgctg
gacaacacacgtggcacgctggaaagcgcgagcagcgacctgcaattcgccctcggcagc
ctggtcaataccgacggctccattctgcacgtcggccaaggcgctctgggcctgagcctg
gccctgctgcaaaacgcaggcggcagcatttccaccaatggcaccctggccctgaccggc
gacagctggaccaacagcaccacgctgcaagcggccaacctggacctgaacatcggcagc
ttcacccagctcggcggcgggcagttactggcagccaacagcttcatcgggcgcggcggc
aactggaccaacgacgggcgcatcgccagcgacggtacgctggacgtgcgcctgaccggc
gcctacaacggcgcaggcagcatgaccagcctgggcgcttcgacgctgaaggccgcgcaa
ctcaacctgaccgacgccaacgcacggctggccagcggcgctgccggtgtcatcgatatc
gatggcatcctcaacaacagcgggcgcataacgggcaacaccgacctgcaagtaaacgcg
ggcaccctcaacaacttcggcaccctgggcgcgggcggcaatctgtccgtcagcaccccg
acactgctgaaccagaacgcgctgatcttcagcggcggcaatacctcgctgctggtcaat
gatttcaccaaccagtatgccgatgtgtacagcatgggcaatttgcagatcagccgcgat
gccgcaggcgcgttcgccaacagcatcgtcaaccgctctgccacgctgaccagcgacggc
agcatgctgctggccgccaacacggttcagaacattcgtgacgtgctgtcggtcaaggac
tccggcatctacagcgctcgcatcgacgaactgtcctgctccaccccgggcaccggcaat
ctggattgcgacggcggcaaggagcatcacgtctggaagattcagcagctggaaaagctg
gaagtaaccgccgccagcgccgcgtcgagcatcaccgctggtggcaacatgacactggcc
ggtggcgacttcctcaacagcagcagctcgctggccagcggcggggcgttgaccgctacg
ttcaacaacttcaacaatgtgggcgtggtcaccggccagaccgagaacgaccgcatcttc
gtctcccgccgtacccgcgacgatgaccgttgggatgaagacgccaggctgttcaacctg
cgctattcgcaggacagcccgcgctacgacccgaataacctgggtggcttgcaagccgcg
atgagtaacttcatcgcgatcactgagcgtgacgtcccagagcttgaaaccaaccgccag
ctcgcctccgatgccaccacctacgccgccatcatccaggccggcggcccggtcagcatt
accgcaggcaacaacttcgacaacagtgtcgtgcgcggcggcttcacttacgtcagcggc
ggcacacgtacggacaccacagcgccgggcaccgactatgcgacggtcgtaacgctcaat
cgccaattgccgcccgaccttgcacaacagcaggtcaacccgacggcgttgccaggcttc
agcctgccgaccgggcagaacggcctgttccgcctgagcgacacgcaaaacggcgcgagc
ctgcccggcagcggcgcgcaactgctgagcgccgccacagccgcccagccccatccttat
ctgatcgaaaccaacccggcgctgaccgacctgcggcaattcttgagctccagctatttg
ctcgacaccgtcggttacaaccctgacgccgcctggaagcgcctgggcgatggttattac
gagcagcgcctgattcagcaagcggtcatcgcgcgtaccgggcaacgcttcatcgacggt
ctgaccagcgacgaagcgatgtacaagtacctgatggacaacgccatcgccagcaaaagc
acgctggacctcagcgttggcgtggcgctgaccggcgagcaggtcgcggctctgacccac
gacatcgtctggatggaagatcaggtcgtgcgcggcgaacacgtgctggtgccggtgctt
tacctggcccaggccaacaatcgactggccaacaacggcgcgctgatccagggcggcgac
ctgtcgctgattgcgggcaacaacctgaccaacgttggcacgctcagagcgaccaacacc
ctcaacgcccgcgctggcaacagcctcatcaacgaaggcctgatccagaccaacgaacgt
ctgaacctgagttccggaaacgacttgatcaaccgcgcaggcggcgttgtcgccggtcgc
gacgtgaccctcagttccgtgaatggcgacgtgagcaacgagcgcagcgttacccgccac
cagagcgcggtcggcaactccacgtggcgcagagacttcgccaacaacgccgcccgcgtc
gaggccgccaatgacctgaccgtcagcgccgggcgcgacatcaacaccagcggcgcattg
caggccgggcgcgacgtgaccctgctggcagaccgcgacgtcgcgatcaacgccgcacag
ctccagcaaggccgcaccgacggaccgaatcacgtacgcaccagcaccacccaactgggt
gccagcgtaaacgccggccaagacgttgccgtgcaggcgggtcgtgatgtaggtgtcacc
gccagtcgtgtggacgccggacgggatatggccttgcgctctgctggcaacattgcgctg
gagtcggcagccaaccaaagcgagtacgtctcgcgaagcaagaaaaccaaactggaaacc
cgcacggtcaatcagcaagccagcgacctcaacgcgggcggtaacctctcggcagatgcc
gggcaaaacctcgacatcgtcgccagccgggtcacgacaggcggaagcgttgcgctggat
gccgcgcaagacatgaccatcgcgtcggccaaggacgagaactcgtacttctactcgaaa
aagagcaaaagctcattcggacgcagcagcagcaagcagcaggagagctacgacagcacc
aacatggcctccgaggtcaacgccggtcaggacctcaccgtcaatgccagcaaggccgcc
gacggcagcgtcaacatcaatggcggtcgtgacgtcagtgtgatcggcagcaagctgtcg
gcaggcaacgacctggtactgggtgccaccaacgatgtggcggtgctctcgggcgtcgaa
gaacacggggcgtacagcaagaagaccaagtccggtttcctcggcctgtcgaaaagcgga
aaaagccagctgaagaccagcgccacgcaggtcggcagcgagctgaacgctggcgacgat
gtggtgcttgcgtccggcaaggacgtgcggctgcgcgccagcgaaatcggcgcgggcaat
gacgtggacgtcagagccggtctactggacaagaccggtgatatcaatctggtctcggcc
aacgaccaggcctacagccgtagcgaggagtacaagaagaaaaccggcctgtcagtgtct
ggcggtttcctgtccatctcgtcggccaaggaggccggccgcgtcgcacagagcagcacc
agcgtcggcagccaggtcaacgccgtgcgcgatgccgatctgcaagccgagcgcgacatc
aatgtcatcggcagcagcatcaacgcaggcggcaacgtgcgcttgaacgccggtcaggac
gtcaacgtgctggccgcgcagaacagcacctccaatcaggactgggaaaagaaccggcag
accggcatcggtgtgtcctctaacgccaacggcgtgacattcttcgcaggcgttgatcgc
accaaggagaaaaaccgccttgagcaacagaccgccgccgccagccagatccgcgccggt
gaaaacctggcggtcgatgccaggcgcgacatcaatcaggtcggctccgacctggaagcc
gccaacaatgtcgacctgacggccgggcgcaatatcaaaatcgatgcggcgcgtgagtcg
caactgatcgaacagcagcgcgaaagctcgcgcaacggcctcagcctgagcgtcaaccac
aactacggcagcacccgggatgccgtgagtggcgcaggcaaaggcgacgacgcggtcagc
aagggatcgagcacgctcagggcagtggacggggtttcgcagttcctgtcaggcccgacg
gctgacgccaagctgggcaacagcaagcagagcaccagccagcaggtcatcgaagaaacc
aaccgcgcctcgaccctcagcgctggcaacgacgtgaacctgtcagcgaacaacgccgtg
caggtcaccggtggtcagcttcaggcgggccgcgacatcaacgtcacaggccaggacgtc
accctcgatgccgccagaggtcgctacagccaggaaacccgcgagcgtcaaagctggggc
ggcatccacggcggcaccagcggcggcttcaagctcggcatcggcggcagcaacggcatc
gccagcggtgatcaaagccaggagtcttcgaccgtcaccgcgctgcaagccggccgcgac
atcaacctgcaagcccgcaacgacctcaacctgatcggcacccaggcgcaggcacagcgc
aacatcgacctgcgcgccggcaataacctcaatatccgcgccgcccagaacaacagcagc
accgacaacacccgcaagaatggcggcggcgaagccggcatcgcagtagggccgggcggt
atcggcgtctacgccagcgtcaacatcggcaagggcgacctcgaacgcgaaggcttgcag
caacaggaagcctatctgtacgcaggcaatcgtctgggcttcaccagcggccaggacacc
aacatcggcggcgcaacgctgcgtggcaatgacgtggtcgggcgtgtaggccgcgacctc
aacgtcacttcactggccaacaccggcaaggtcgaaggcaaggaatacgacctcagcgcc
accgtggtcgtcggcttcggcggcagtgtcagcggctcggcgggctatggccgcaccaac
ggctcgaccaactggatcgagcaacagaccagcatcaccggcaaagaccaggtcgacatc
cgcacgcagaaccacacccaactcgacggcgcactcatcgcctccgacacgggcaacctc
aaactcgacaccaataccctcggcttcagcgacatcgccggtaaggacaaagaacacggc
tactacctcaacgtcggcggctcctacggcaacagcagcggcgccgttcaggacccgagt
caggtcagcaaaggtaaacaaggccagaacggctggagcgtggagggctggaactacgag
aaggatcgtcagcaggtcgtgcgcggtacggttggggctggcgatgtggtggtgcggggc
gacgcggcggcgggtaaagactcgactgccgggctgaatcgcgatgtggataaagcgtac
gagatcacgcgcgatgatgagcatcggactgacttgtatgtgacgaagagttcggtggag
gcggccagtcaaccggtcgtcaccgccaaacagtggacgaaccagttactgacctacgac
gacaccgccaggcagaactacgagaatgcttctcgcgatttgacacgtgccgtcaataaa
atcgaaagcaccttgggccgccagatggatacgggcgcctccaaactgatgggcgctgac
ttcgccgaaaacaccatggactcgttgctccaaggtggcatgacgcgcgaccaggccatg
aaaaccatggccgatcctcagttccaggagagcgtcgtcgcggaaatcgcacgccttgcc
gggatcgacctcaacccggttgaagacctggacaagacgcttcaggaagacaatagaccc
aacagtcccggggctatggaattacctgcctccttcgtcaatccgacggacaaggaacag
ctcaccgttgctcaggatacgctgcggtcgatggcttcgatcaaccagtacatccaggag
catccggcgcaacaggaagcggtgagtgtattggtggcagttgcgcaggggcctaaaggt
ctggtgcaactggcggtttacaacgcggtttccgagacgccgttggggcagagcctgggc
cagaaggttgctgaatacagcgacgcgctgggggagcaggttgcaagtgcaatggagggc
aagccgcttaacaaagatgacaacagtgagctgtacctcatcggcggaggagggctcgcc
gccgggctcttgacgggtatgctggcaagcggcaaattctcaggcaagtccaaggtagtc
acagccgaaatgagggctgatccgtaccatcctgactggaagaactataccggtaaggat
agaggggttggggctgatgttgttaagggtggggagggtggaaaagcgacaggcgaagct
gctactcagatcccaggccgagtacagtcgcgtgtaaacattgccaatggccgcacggaa
acgacccctcttcgtgataacggcaatcccgtatctgcgggtttcgatcatgttatagat
gggcatttcaatagagaaatctccaactcgcgctccgtgtttaccattgctccagatgag
ctgaaaggcatcctacagagcagttctgttgtaaagtccccggttgtagcgctgccagat
ggccaattcgtaagaacagttgatgtgggtcgggctattggtactactacattgaaggat
ggcggcattcctacgtctgtgataaaggtattcaccgataaagcagggaatttaattacg
accttcccggttaaggtgggcaactga
DBGET
integrated database retrieval system
