Pectobacterium cacticida: OI450_01100
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Entry
OI450_01100 CDS
T08693
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
pcac
Pectobacterium cacticida
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcac03019
]
OI450_01100 (csrD)
Messenger RNA biogenesis [BR:
pcac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OI450_01100 (csrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
UYX07063
LinkDB
All DBs
Position
251798..253741
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AA seq
647 aa
AA seq
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MGLTTRFSTLIVLLTLCSLFLMLFSSMISLRYYSQLRVEQMLREVTTSVDQALLVQSPEN
IQYWLPGMMKTAGIVTLAIQDNDSILYSMYLPEADKSRMHLYHEVEFPLMQHLNTTITLK
YVDPLTGLPRFTISMLSILPAAGLLLVMLYFSTRWLRRQFAGQAALEKRAQRILRGERES
VMRGSVHEWPVNVSGALDQLLSDLVDAREERGRVDTLIRAFAAQDAETGLSNRLFFDNQL
TTQLELEEGEEVRTHGVVMMIRVPDFETLQEIHGDSCALQEYRFTLVNLLSTFVMRYPSA
LLARYFSSDFTVLLPHRTLKEADAIASQLVKALDILPTCPLIDRESVLHIGICAYHSGQS
AEQIMESVEDATRNAVLRGENNWCVFDRQVPDKSRGSVKWRTLLEQTLARGGPRLYQKPA
VTKANVVHHREIMSRIYDGEQELLAAEYMPLVQQLGLATNYDRQLVTRIIDLSASWPGET
LALPLSVDSLLQKSFLRWLKGALLQCPKMRRQCILFELAEADICQYIGRLRPVLNDILGF
GCRLAVTQAGLTLVSTAYIKSLPVEIIKLHPGLVRSLDRRPENQLFVQSLTEACKGTSTR
VFAAGVRTKEEWRTLLDKGVYGGQGDFFAPSVPVTDALKKYSPRRRV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgggattgacgaccagattctcgacactcatcgtattgctgacattgtgttcccttttc
ctgatgttgttcagtagcatgattagcctccgctactatagccagttacgggttgagcaa
atgttgcgcgaggtcacgaccagcgtcgatcaagcgctgttagttcagtcgcccgaaaat
atccagtattggcttccggggatgatgaaaacggcaggtattgtcaccctggcaattcaa
gataacgattcgatcctctattcgatgtatttgcctgaagccgataagagccgcatgcac
ctctatcacgaggtggaatttccattgatgcagcatctcaacacaacgattactttaaag
tatgtcgatccgttgacggggttaccgcgtttcactatctcaatgctttcaatactgcca
gcggcggggttgctgttggtgatgttgtatttttctacccgctggctacgccgtcagttc
gccggacaggcggcgttagaaaagcgtgctcagcgcattcttagaggcgaacgagaatcg
gtgatgcgcggttcggttcatgaatggccggtcaatgtcagtggagcgctcgatcaattg
ctgtctgatctcgtggacgcgcgggaagaacgtgggcgagtcgataccttgattcgcgct
tttgctgcgcaggatgctgagacggggctaagtaatcgcctgttttttgataatcaactt
actacgcagttagaattagaagaaggagaagaggttaggacgcacggcgtcgtgatgatg
atccgggtgcctgattttgaaaccttacaggaaatacacggcgatagttgcgcacttcag
gaatatcgctttacgttggtcaatctcttatcgacgtttgtcatgcgttatccttccgcg
ctgctggcgcgttattttagcagcgattttaccgtcttacttccccaccgtacgttaaag
gaagccgatgcgatagcctcgcagttggtgaaggcgctcgatattcttcctacatgccca
ttaatcgatcgggaatcggtccttcatattggtatctgcgcttatcacagcgggcaaagt
gccgaacaaataatggaaagtgtggaagatgcgacgcgcaacgcggtgctgaggggcgaa
aataactggtgcgtatttgacagacaggttcctgacaaaagccgtggcagcgtgaaatgg
cggacattgctggaacagacgttagcgcgtggtggtccgcggttataccaaaagcccgcg
gttaccaaagcgaatgtggtacatcatcgtgaaatcatgagtcggatttacgacggtgaa
caggaattgctcgccgcggaatatatgccactggttcaacaactggggttggcgaccaat
tatgataggcagcttgtcacgcgaataatagatctgtcggcgagctggcctggagaaaca
ctggcgctccccctcagcgtggactcgcttttgcagaaatcgtttctgcgttggctaaaa
ggtgctttactgcaatgtccgaaaatgcggcggcagtgcattttatttgaacttgcagag
gctgatatttgtcaatatatcggtcgcctacgtccggttctcaatgacatcctgggattt
ggctgtcgtctggcggttacacaagctgggttgacgctggtcagtaccgcgtatatcaag
tcacttcccgtggagattattaagctccaccccggtttagtgcgtagccttgaccgtcgc
ccggaaaatcagctttttgtacaaagtctgactgaagcctgtaaagggacgtcaacgcgg
gtatttgccgccggcgtacgaaccaaagaagagtggcgcacgttgttggacaagggagta
tatggtgggcaaggcgatttttttgctccatcagtccctgttacggatgcgctgaaaaaa
tattcaccgcggcgtcgtgtttaa
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