Pectobacterium cacticida: OI450_01860
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Entry
OI450_01860 CDS
T08693
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pcac
Pectobacterium cacticida
Pathway
pcac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI450_01860 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcac03019
]
OI450_01860 (rhlB)
Enzymes [BR:
pcac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OI450_01860 (rhlB)
Messenger RNA biogenesis [BR:
pcac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OI450_01860 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
UYX07204
LinkDB
All DBs
Position
complement(389429..390718)
Genome browser
AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALESKGFNNCTPIQALALPLALSGRDIAGQAQTGTGKT
LAFLASTFHYLLSHSANTERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYG
GDGYDKQLKVLEHGVDILIGTTGRLIDYVKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPADQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTQGNLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGLSGFSISLA
CEEYALNLPAIETYIGHSIPVSKYNSDALMTDLPAPKRLTRPPRSNNGPRRNSGPRRNGP
PRNNRKRAD
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcacccgcaggtt
atcgaggcccttgaaagtaaagggtttaataactgtacgcctattcaggcattagctctg
ccattagctttgtcagggcgagatattgcgggccaggcgcaaaccggaaccggcaagacg
ttagcttttctcgcgtctactttccattatttgctttctcactctgcaaacacagagcgg
caaacgaatcaaccacgcgccttaattatggcgcccacgcgtgaactggctgtccagatt
cactcagatgctgaagcattgtctcaccttaccgggctaaaattgggtttagcctacggt
ggcgatggttacgacaagcaactcaaggtgctggaacacggcgttgatattttgattggc
accaccggacgcttgatcgattacgttaaacaaaatcatattaatttaggtgcgattcag
gtcgtcgtgttagatgaagcagaccggatgtacgatctcggcttcatcaaagacattcgt
tggctattccgtcgtatgccgcctgcggaccagcgtctgaacatgctcttttccgccacg
ctctcttatcgggtgcgtgaactcgcgtttgaacagatgaataatgcagagtatgtggaa
gtcgaaccggaacagaaaaccggccaccgcattaaagaagaactgttttatccatcaaac
gaagaaaaaatgcgcctgcttcagacgcttctggaagaagagtggccagaccgctgcatt
atttttgccaatactaaacatcgctgcgaagacatttggggccatctggccgccgacggt
caccgcgtagggctattgacgggtgatgttgcacagaaaaaacgcctgcgtattttggaa
gattttacgcagggtaatttggacattctggtggctacggatgtcgccgcacgcggtttg
catattcctgccgtcacgcacgttttcaactacgacctaccggatgactgcgaagactac
gtacaccgtattggccgcacgggccgcgcggggctcagcggattttccatcagcctggcg
tgcgaagagtacgcactgaatctcccggctatcgaaacttacatcggtcacagtattccg
gtcagtaaatacaacagcgatgcgttgatgaccgatctgcccgcgccaaagcgtttaacg
cgcccaccgcgctccaataatggcccacgacgcaacagcggcccgcgtcgcaatggcccg
ccccgtaacaaccgaaaaagagcggattaa
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