Pectobacterium cacticida: OI450_01870
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Entry
OI450_01870 CDS
T08693
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcac
Pectobacterium cacticida
Pathway
pcac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI450_01870 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcac03021
]
OI450_01870 (rho)
03019 Messenger RNA biogenesis [BR:
pcac03019
]
OI450_01870 (rho)
Transcription machinery [BR:
pcac03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OI450_01870 (rho)
Messenger RNA biogenesis [BR:
pcac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OI450_01870 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
UYX07206
LinkDB
All DBs
Position
391656..392915
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGESMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtttctgagttaattactcttggcgaaagt
atgggtctggaaaaccaggcccgcatgcgtaaacaggatattatcttcgctattctgaaa
cagcatgccaaaagcggcgaggatattttcggcgacggcgtgctggagatattgcaggat
ggctttggcttcctccgctccgcagacagttcctacctcgcaggccccgatgatatctac
gtttctcccagtcaaatccgtcgttttaacctccgcactggcgatacgatttccggcaaa
attcgtccgccgaaagagggcgaacgctattttgcgctgctgaaagttaacgaagttaac
tacgataaaccagaaaacgcccgcaacaagatcctgttcgaaaacttaacgccactgcac
gcaaattctcgtctacgtatggaacgtggtaacggttcgacggaagatttgacagcgcgc
gtgctggatctggcttcgccaatcgggcgtggtcagcgtggtctgatcgttgcgccgccg
aaagcgggtaaaaccatgctgttgcagaacatcgcgcagagcattgcttataaccatcca
gactgcgtgctaatggtgctgctgattgacgaacgtccggaagaagtgaccgagatgcag
cgtctggtgaaaggtgaagtcgtggcgtctacgtttgatgaaccggcttcgcgtcacgtt
caggtcgccgaaatggtgatcgagaaagcgaaacgtctggttgagcacaagaaagacgtt
attattctgctggactcgattactcgtttggcgcgtgcctacaacaccgttgttccggca
tcgggcaaggtgctgaccggtggtgtggatgctaacgcattgcatcgtccgaagcgtttc
ttcggcgcggcgcgcaacgtagaagaaggtggcagcctgacgatcatcgccacagcgctg
gttgataccggttcaaaaatggatgaagtgatttacgaagaattcaaaggcacaggtaac
atggaattgcacctggcacgtaaaatcgcagaaaaacgtgtcttcccggcgattgactac
aaccgctccggtacgcgtaaagaagaattgcttacgacctcagaagaattgcagaaaatg
tggatcctacgtaagattatccaccctatgggcgagatcgacgcgatggaattcctcatc
aataagctggcgatgacgaaaacgaacgatgaatttttcgatatgatgaagcgttcataa
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