Pectobacterium cacticida: OI450_03370
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Entry
OI450_03370 CDS
T08693
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcac
Pectobacterium cacticida
Pathway
pcac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI450_03370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcac03019
]
OI450_03370
03009 Ribosome biogenesis [BR:
pcac03009
]
OI450_03370
Enzymes [BR:
pcac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OI450_03370
Messenger RNA biogenesis [BR:
pcac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OI450_03370
Ribosome biogenesis [BR:
pcac03009
]
Prokaryotic type
rRNA helicases
OI450_03370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
UYX07466
LinkDB
All DBs
Position
713227..715071
Genome browser
AA seq
614 aa
AA seq
DB search
MTDLLTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSHLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMRDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDIET
LAAALLKMAQGERPLILPPDPVFRPRREFRERDDSRGERRRDPREARDGERPQRRERRDA
GEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGDLLS
HFTRTRILNKPMNMQLLGDAVQHQERRERSDSRGGRSFSGGERREGGRRSFGGQGDARRE
GQRAPRRRPADVGQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttacttacttctttttccgatttggggctgtctgctccgattattaatgcc
ctgaccgatctgggctatgaaaaaccatcgccgattcaggctgaatgtattccccacctg
ctgaacggtcgcgatgtgctgggtatggcgcagaccggcagtggtaaaactgcggctttt
gctctgccgttactcaataatttaaaacctgagttaaaagcaccgcagatgctggtgttg
gctccaacccgagagttggctgttcaggttgctgaagcctgtaatgattttgccaaacat
atgcacggcgttaacgttgttgccttgtacggcggccagcggtatgacgttcaactacgg
gcgttgcgtggcggtgctcaaattgttgtaggtacgccgggtcgtctgctggatcatttg
aagcgcggaacgcttgatctatctcatctgagcggtttggtgctggatgaagctgatgaa
atgttgcggatgggcttcatcgaagatgttgaaaatatcatggcccagatccccgcagag
catcaaactgcgctgttttctgcgaccatgcctgaagcgatccgtcgcattacgcgccgc
tttatgagagatccgcaagaagtgcgtatccaatcaagcgtgacgacgcgtcctgacatt
agccagagctactggacggtgcagggcatgcgtaaaaacgaggcgctggttcgtttcctt
gaggcggaagattttgatgcggcgattattttcgttcgtactaaaaatgcgacgttggaa
gtggccgaagcgctggaacgtagtggttataacagtgctgcgctgaacggtgacatgaat
caggcattgcgtgagcaaacgctagagcgcctgaaagacggtcgtcttgacatcctgatt
gcgaccgacgttgcggcgcgtggtttagatgttgaacgtattagcctggttgtgaactat
gatattccgatggacgccgaatcctatgtccatcgtattggtcgtactgggcgtgcgggc
cgcgctggtcgtgccttgttgtttgtagaaaaccgtgaacgccgcttgctacgcaacgtt
gaacgcacaatgaagctgacgattcctgaagtggaattaccgaatgcagaattgctgggt
cagcgccgtctggctaaatttgccgcgaaagtacaacagcagttggaaagtagcgatttg
gatatgtaccgcgcgctactgaccaagttacaaccgcaggaagagttggatatcgagacg
ctagcggctgcgctactgaagatggcacagggtgaacgtcctctgattctgccacccgat
ccggtattccgtcctcgccgtgagttccgcgagcgtgatgattcgcgcggcgaacgtcgc
cgcgatccacgtgaagcccgtgatggcgagcgtccgcaacgtcgcgagcgtcgtgacgct
ggcgaaatggaattgtatcgcatcgaagtaggtcgtgatgacggtgttgaagttcgccac
attgttggcgctatcgccaacgaaggcgatatcagcagccgttacattggcaacatcaaa
ctgtttgcgtctcactcgactattgaattgccgaaagggatgccaggtgatctgctgtca
cactttactcgcacacgtattttgaataagccaatgaacatgcaattgttgggtgacgca
gtgcaacatcaggagcgccgcgaacgttctgatagccgaggcgggcgttctttctccggc
ggtgaacgccgcgaaggtggacgtcgttcatttggcgggcagggtgatgctcgtcgtgaa
ggtcaacgcgctccgcgccgtcgtcctgccgatgttggccaataa
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