Pectobacterium cacticida: OI450_04190
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Entry
OI450_04190 CDS
T08693
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcac
Pectobacterium cacticida
Pathway
pcac03030
DNA replication
pcac03430
Mismatch repair
pcac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OI450_04190 (dnaE)
03430 Mismatch repair
OI450_04190 (dnaE)
03440 Homologous recombination
OI450_04190 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcac03032
]
OI450_04190 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcac03400
]
OI450_04190 (dnaE)
Enzymes [BR:
pcac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OI450_04190 (dnaE)
DNA replication proteins [BR:
pcac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OI450_04190 (dnaE)
DNA repair and recombination proteins [BR:
pcac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OI450_04190 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UYX07610
LinkDB
All DBs
Position
886259..889741
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHSV
GVKPIIGADFYVESEELGDELAHLTILAMNNVGYQNLTLLISRAYQRGYGAAGPTIDRDW
LIDYQEGLILLSGGRRGDVGQFLLRGNQAQAEQCLAFYQEHFPQRYYLELIRTSRPDEES
YLHAAVELATKYGLPVVATNEVCFMSSEDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYL
RSEAEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVQCAKKGL
EERLEFLFPDPEVRAARRPAYDERLDTELSVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LQEIYDADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKEGAERMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVMEKLIMSGAFDRLGPHRAALMN
ALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSTVPPWPEQVVLDGERETLGLY
LTGHPITQYIKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRGNRIGVCTLD
DRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMDISEAREKY
ARGLAISLTDRQIDEQLLNRLRQSLEPHRSGTIPVYLYYQREDARARLRFGAAWRVTPAD
ALLNELRALVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccccgttttgttcacctgcgtgttcacagtgactattccatgatcgatggg
ctggcgaaagtggggccgctggtaaaaaaggcggcggcgcttggtatgccggcgctggcg
attaccgatttcaccaatttgtgtgggctggttaagttctatggcggcgcacatagcgta
ggcgtcaagccgattatcggtgccgatttttacgtcgaaagcgaagaattaggcgatgaa
ctcgcgcatcttacgatcctggccatgaataatgtgggctaccagaatctcacgttatta
atctctcgcgcctaccaacgaggctatggtgccgctggtccaacaatcgatcgcgattgg
ctgattgactatcaggaagggctgattttactctctggtggtcgtcgcggcgatgtgggg
cagtttttacttcgcggcaatcaggcgcaggccgaacagtgtctggcgttttaccaagag
cattttcctcagcgctactatttggaactgattcgcacatcccgtcctgatgaggaaagt
tatttgcatgcggcagtcgaattagcgacgaagtacggtttgcctgtcgtggcgaccaat
gaagtatgctttatgagtagcgaagacttcgatgctcacgaaattcgtgtcgcgatccat
gatggttatacgcttgatgaccctaaacgcccgcgccactatagtccgcagcagtacctg
cgctcggaagcggaaatgtgcgagctattcgcagatatccccgaagcgctggcaaacagt
gtcgaaattgccaaacgttgtaacgtaacgattcgtctgggggagtattttttaccgcaa
ttcccaacgggcgatatgaccacggaagacttcctggttcagtgcgccaaaaaagggctg
gaagaacgtctcgaattcttattccccgatcctgaagttcgtgctgcgcggcggcccgcc
tacgatgagcggcttgatactgaactgagcgtcattaaccaaatgggtttccctggttac
tttcttatcgtgatggaatttatccagtggtcaaaagataacgacgtgcctgtagggccg
gggcgtggttctggtgccggttcgttagtggcctattcattaaaaatcaccgatctggat
cctctggcattcgacctgctgttcgaacgtttcctaaatcctgaacgcgtttccatgcct
gacttcgacgtcgatttttgcatggaaaaacgcgacagggttatcgatcacgtggcggag
atgtatggccgtgatgcggtatcgcaaattatcacctttggtacgatggcggcgaaagcg
gttattcgcgacgtggggcgcgtgcttgggcacccttacggctttgtcgatcggatctca
aaactggtgccgcccgatccgggcatgacgttggaaaaagcctttgcggctgaaccgcag
ttacaggaaatttatgacgctgatgaggaagttagggccctcatcgacatggcgcgtaag
ctcgaaggggtgacgcgtaacgccggtaaacatgcgggtggggtagtgatctcacccacc
aaaattaccgatttcgccccactgtattgtgatgcggaaggaaaccatccggttacccag
tttgataaaaacgatgtggaatatgccgggttagtgaagttcgactttcttggcctgcgc
acgctgactattatcgactgggcattagagatgattaacgcccgtcgtgcgaaacagggt
ttggagccgattgatatcgcggctattccacttgacgacaagaaaagttttgacatgttg
caacgctcggaaactacggcagtattccagctcgaatcgcgcggcatgaaagatttgatc
aaacgtctgaagcccgactgttttgaagatatgatcgcgctggtggcgttgtttcggccg
gggccgttgcaatccggtatggtggataacttcatcgaccgtaaacatgggcgtgaagcc
atatcctatcctgatatcgagtggcagcacgagtcccttaaacctgtactggaaccgacc
tacggtattatcctgtaccaggaacaggtcatgcagatcgctcaggtattgtctggctac
acgctgggtggtgcggacatgctgcgtcgcgcgatgggtaagaaaaaacccgaagagatg
gccaaacagcgttccgtttttaaggaaggggcggagagaatgggcatcgacggcgaattg
tcgatgaaaattttcgacctggtggaaaaatttgccggctatggtttcaataaatcgcac
tctgccgcctatgcgctggtgtcttaccaaacgttgtggctcaaggcgcattatccggct
gaattcatggcggcggtgatgacagccgatatggataacaccgataaagtggtaggtttg
gtggacgaatgctggcgaatggggctaaaaatcctgcccccagacataaacagcgggctg
tatcacttccatgtcaatgacgacggcgagatcgtttacgggatcggcgcgatcaaaggg
gtaggcgaagggccaattgaagcgattattgaggctcgcaatcagggcggctatttcagg
gaactgttcgatctctgtgcgcgcaccgacatcaaaaagctgaaccgacgagtgatggaa
aaattgatcatgtcgggtgcgtttgatcgtttggggccacatcgtgccgcgctaatgaat
gcgttgcctgatgcgttaaaggccgctgaccagcacgcaaaagcggaagcaatcggccag
gtggatatgtttggtgttttagcggaagcgcctgaacaggttgaacaatcctatagcacg
gtgccgccgtggcctgaacaggtggtgttagatggtgaacgggaaacgctggggctgtat
ctgactggtcacccgatcacacagtatattaaagaaattgagcgttatgctgggggcgtg
cgtttaaaagacatgcatccgacggagagaggcaaaatgaccaccgctgtcggattggtg
ttggcggcgcgcgttatggttacgaagcgtggcaaccgtatcggcgtctgtacgttggac
gatcgttccggtcgccttgagatcatgctatttaccgatgctctggaaaaataccagcat
ttacttgagaaagaccgtattcttatcgccagtggacaggtcagctttgatgactttagc
ggtgggcttaaaatgaccgttagagagttaatggatatcagcgaagcgcgggaaaaatat
gcgcgcgggcttgctatctcgctgactgacaggcaaattgatgagcaactgttaaaccgc
ctccgtcaatcgttggaaccccatcgatcggggacgatcccagtgtatctctattaccag
cgtgaagatgcgcgcgctcgtctccgttttggtgccgcgtggcgtgtaacgcctgccgat
gcgctactcaatgagttgcgggcattagtcggtaatgagcaggtagaactggaatttgac
taa
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