Pectobacterium cacticida: OI450_08820
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Entry
OI450_08820 CDS
T08693
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pcac
Pectobacterium cacticida
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcac03019
]
OI450_08820 (hrpA)
Enzymes [BR:
pcac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OI450_08820 (hrpA)
Messenger RNA biogenesis [BR:
pcac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OI450_08820 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
nSTAND3
T2SSE
ResIII
PhoH
Zeta_toxin
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UYX08428
LinkDB
All DBs
Position
1881439..1885326
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLSALSTQLSELMLRDSQRLRRRLQGAAKVSNPQALAAIAQEIEGEIATARQKVENR
RASRPAILYPEQLPVSQKKDEILEALRHHQVIIVAGETGSGKTTQLPKICLELGRGVQGL
IGHTQPRRLAARTVADRIATELDTPLGSSVGYKVRFNDQVSDNTLIKLMTDGILLAEIQQ
DRLLLQYDTLIIDEAHERSLNIDFIMGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNHA
PIIEVSGRTYPVDVRYRPVVEDADDSERDQLQAIFDAVDELTREGPGDILVFMSGEREIR
DTAEALARLELPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVDAPDKRNIQDGVQLLEELGAITLAENGHYR
LTPLGQQLAQLPIDPRLARMVLEARKTGCVREVMIITAALSIQDPRERPLDKKQAADEKH
RRFADKDSDFLAFVKLWDYLREQQKTLSAGQFRRQCRVDFLNYLRVREWQDIYTQLRQVV
KELRLPVNSEPADYLSIHCALLTGLLSHIGQKDIDKQEYSGARNARFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAPHLIKRSYSDPHWEKAQGTVMAQEKVTLF
GLPIVAARKVNYSAIDPTLAREMFIRHALVEGDWQTRHAFFRANLKLLAEVEDLEHKSRR
RDILVDDETLFAFYDRRLPRDIISSRHFDRWWKDASRDNPDLLNFEKSMLIKDGAGKVSA
LDYPNFWHQGGLKLRLTYQFEPGADADGVTVHIPLPILNQVREEGFEWQIPGVRRELIIA
LIKSLPKPLRRNFVPAPNYAEAFLARVTPLEKGLLDALERELRLMTGVTVPRDAWQWDQV
PDHLKITFRVVDEKNRILRESKDLNALKAQLKEKVQQTLSSVADDGLEQRGLHVWSFGSL
PDCYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQAMQQGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACAVDKLVELSGGPVWQEQAFQQLHEKVRAEL
NDTVVDIAKQVEVILTTVFSINKRLKGRVDIALALALSDIKQQMNGLVFRGFVTDNGWRR
LPDVLRYLQAIERRLDKLAQDAHRDRAQMLKVQQVQQAWQQWWNTLPAERRDDDDVKAVR
WMLEELRVSYFAQQLGTPFPISDKRVLQAMEQIEA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacctctcagtgcattatctacgcagttaagtgagctaatgcttcgcgatagt
caacgtctgcgccgccgtttgcaaggggccgccaaagttagcaatccgcaggctttggcc
gccatcgcgcaggaaattgagggggaaatcgcaacggcgcggcagaaagtagagaatcgg
cgggcaagtcgtccggcgattctctaccctgaacagcttcccgtgagccagaaaaaggac
gagattcttgaggcgttgcgccatcatcaggtgattatcgttgcgggcgagacgggatcg
ggcaagactacgcagttgccgaaaatttgtctcgaactggggcgtggcgtacaagggttg
attggtcacacacaaccgcgtcgtctggcggcaagaaccgtagccgaccgtattgcaacc
gagttggacacgccgctgggtagcagtgtgggatataaggtgcgttttaacgatcaggtc
agtgacaataccctgattaagctgatgaccgacgggattctactggcggaaattcagcag
gatcgcctgctattgcagtacgacacgctgatcatcgatgaagcgcatgaacgcagcctg
aatattgattttatcatgggctatttgcgccaattgttgccaaaacgtcctgatttgaaa
gtaattattacctcggcgactatcgacccgcagcgcttctcgcgccattttaaccatgcg
ccgatcattgaagtgtctgggcgaacttatcctgtcgatgtgcggtatcgccccgtggtg
gaagatgccgatgacagcgagcgcgatcaattacaggcgatttttgatgccgtggatgaa
ctgacgcgtgaagggccgggcgatatcctggtgttcatgagcggagaacgcgaaattcgc
gacacggccgaggcgctggctcgtctcgaattgccgcataccgaaatactcccgctgtac
gcccgtttgtcgaatcaggaacaaaatcgcgtttttcaatcacatcatggccgccgtatc
gtgctggcgaccaacgtagcggaaacgtcactcaccgttccagggatccgctatgtgatc
gaccccggtaccgcgcgtatcagccgctacagtttccgaactaaggttcagcgcctgccg
attgagcctatctcacaggcgtcagcgaatcagcgtaaagggcgctgtggccgcgttgcc
gccggggtatgcattcgcctgtattccgagcaggattttctgtcgcggcctgaatttacc
gatcctgaaattctccgcaccaatttagcttccgttattttgcaaatgacctcgttgggg
ctcggcgatatcgccgcgttcccctttgttgatgcgccggacaagcgcaatattcaggac
ggcgttcaattactggaagaactgggtgcaattacgctggcggagaatgggcattatcgc
ctgacgccgctggggcaacaactggcgcagttaccgattgatccgcggctggcgcgaatg
gtattggaagcacggaaaaccggctgcgtgcgtgaagtgatgatcatcactgcggcgctg
tcgatccaggatccacgtgaaaggccgttggataagaagcaggccgcggatgaaaagcat
cgccgctttgccgataaagactccgattttctggcctttgtcaaactgtgggattatctg
cgagaacagcaaaaaacgctgtccgccggccagttccgccgacagtgccgtgtggatttt
ctcaactatctgcgtgtgcgtgaatggcaggatatctacacgcaactacgtcaggtggtg
aaagagctacggctaccggttaacagcgaacccgccgactatctgagcatccactgtgcg
ctgctcaccggcctgttatcacatattggtcagaaagatattgataagcaggaatatagc
ggtgcgcgtaacgcgcggttcgccatttttcccggttcagggttattcaaaaaaccgcct
aagtggacaatggtcgccgaactggtggaaaccagccgtttatgggggcgcattgccgcg
cgtattgaaccggagtggatagaaccgctggccccgcatctgataaaacgcagctatagc
gatccgcattgggagaaagcgcagggcaccgtgatggcgcaggagaaggtgacgcttttc
gggctgccaattgtcgctgcgcgtaaggtgaattacagcgcaatcgatccgacactcgca
cgcgaaatgttcatccgccacgcgctggtggaaggggattggcaaacgcgtcacgccttt
tttcgcgctaaccttaagttgctggcggaagtggaagatttagaacacaaatcgcgccgc
cgtgacattttggtggatgacgaaacgctgttcgctttctacgatcggcgtttgccgcgc
gatattatctcgtcgcgtcattttgatcggtggtggaaagatgccagccgggataatccc
gacctgcttaattttgaaaaaagcatgttgattaaagacggcgcggggaaagtaagcgcg
ctggattatccgaatttctggcatcagggtggcctgaaattgcgtttaacctatcagttt
gagccgggtgcagatgcggatggcgtcacggtacatattccgctgcctattctcaatcaa
gtgcgcgaagagggcttcgagtggcagattcccggtgtgcgtcgcgaactgatcatcgcg
ctgattaaatccttacccaaaccgttacgccgtaactttgtccctgcgccaaactatgcc
gaggcgtttctggcacgagttacgcctttggaaaaagggttattggatgcgctggagcgt
gaattgcggctgatgacgggcgttacggtgccgcgtgatgcgtggcagtgggatcaggtg
cccgatcatctaaaaatcacttttcgcgttgttgacgagaaaaaccgcatattgcgggaa
agcaaagacctgaatgcactgaaagcgcagctcaaagaaaaggtacagcaaaccttgtca
tccgtggcagacgatgggctggagcagcgcggtctgcatgtctggagttttggctcgctg
ccggattgttatgaacaaaaacgcggtggctattcggtcaaggcttatccggcgttagtg
gatgagaaggacagcgtagcgattcgcctctttgatactccgcatcagcaacaacaggcg
atgcagcaagggttacgccggttgttgctgctcaatatcccgtcgccgattaaatatctg
catgaaaaattgccgaataaggcgaaacttggcctctatttcaacccgtatggcaaggtg
ctcgatctcattgacgattgcatcgcctgtgcggtggataaactggttgaattatccggt
ggcccggtctggcaagaacaagcctttcagcagttgcatgaaaaagtgcgtgcggagcta
aatgataccgtggtagatatcgccaaacaggttgaagtgattctgacaacggtattctct
atcaataagcgtctgaaagggcgtgtcgatatcgcgctggcgctggcgttaagcgacatc
aagcaacagatgaacggcctggtgttccgcggttttgtcaccgacaacggttggcgacgt
ctgccggatgtgctgcgttatctacaagcaatagagcggcggttggataaattggcccag
gatgctcatcgcgaccgggcgcagatgctaaaagtgcagcaggttcaacaagcgtggcaa
cagtggtggaacacactaccggctgagcgtcgtgatgatgacgatgtgaaagcggttcgc
tggatgcttgaggagttacgcgttagctattttgctcaacagttaggaacgccgtttccg
atctcggacaaacgcgtattgcaggcaatggagcaaatagaagcgtaa
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