Pectobacterium cacticida: OI450_15170
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Entry
OI450_15170 CDS
T08693
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pcac
Pectobacterium cacticida
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcac03021
]
OI450_15170 (rapA)
Transcription machinery [BR:
pcac03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
OI450_15170 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
Cas3-like_C_2
COG2_N
Motif
Other DBs
NCBI-ProteinID:
UYX06246
LinkDB
All DBs
Position
3301901..3304804
Genome browser
AA seq
967 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDTRMVTLLFPASGENRLYSRSDAPITRVMFNSGDT
VTSHEGWQLKVDEVREENGLLIYCGRRLDDDTPTELREVFLDSKLTFNKPQDRLFAGQID
RMDRFALRYRARKHQHEQAQQQWSGLRGMRASLIPHQLHIAHEVGQRHAPRVLLADEVGL
GKTIEAGMIIHQQLLAGRASRVLIIVPETLQHQWLVEMLRRFNLLFSLFDDERYAEAKQD
SSNPFETEQLVICSLGFVQRSAPRFSQLVNADWDLLVVDEAHHLAWSEENPSPEYQAIEA
LARATPAVLLLTATPEQLGQQSHFARLRLLDPNRFHDYQEFVAEQQQYRPVADAVTLLLA
GEKAQAAELNALSDLLGEQDIEPLLKAINSDSDDNLKARQELITMLMDRHGTSRVLFRNT
RQGVKGFPQRILHQIRLPLPAQYQTAIKVAGIMNANKPLESRARDMLYPEQIYQQFEGDD
ATWWNFDPRVEWLLNYLTANRDEKVLVICAQATTALQLEQVLRTREAIRAAVFHEGLSIL
ERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLIMFDLPFNPDLLEQRIGRLDRIG
QAKEIQILVPYLENTAQALLVRWYHEGLDSFEHTCPTGRTIYDAHHTSLLERLTTVGEQQ
GLDDFIQACRQQHDSLKQQLEQGRDRLLEMHSHGGEQAQRLAQAIAEQDNDVNLVTFALN
LFDIVGINQEDRSDNLIILTPSDHMLVPDFPGLPQDGCTITFDRDQALSREDAQFISWEH
PLIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELIYVVEAQAPKHLQLTRFLPPTPV
RLLMDSKGNNLAEHVEFESFNRQLNAINRHMSSKLVNAVQPDVHAMLQQAETLVETQARQ
LITEAQEQADLQLRRELERLEALKAVNPNIREDELTALENQREQVLSNLHEANWRLDAIR
LVVVTHQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcagcgctggatcagcgatacggaaagcgaacttggattggga
acggtcgttgccgtcgatacacgaatggtcacgctgctttttcccgccagcggcgaaaat
cggctttattcccgcagtgacgcgcccatcacccgtgtgatgtttaattccggcgatacg
gtcaccagccatgaaggctggcagctaaaagtggacgaggtgcgggaagaaaacgggtta
ctaatctattgcggtcggcgtctggacgatgatacaccgacggaactccgtgaagtcttt
ctggacagcaaactgacatttaataaaccccaggatcgcctgtttgccgggcagatcgac
cgcatggatcgctttgccctgcgttatcgcgcgcgtaaacatcagcatgaacaggcgcag
caacagtggagcggcctgcgcggcatgcgtgccagcctgatcccccatcagcttcacatc
gcgcatgaggtcggccaacgtcatgcgccacgcgtgttgctggcagatgaagttggtttg
gggaaaacgattgaagccgggatgatcatccaccagcaactgctcgccggacgggccagt
cgcgtgttgattatcgtaccggaaaccctgcaacatcagtggttggtcgaaatgctgcgc
cgctttaacctgttgttctcactgtttgacgacgagcgctatgccgaagccaagcaagac
agcagtaatcccttcgaaaccgaacaactggtgatctgctcactggggttcgtgcaacgt
agcgccccgcgtttttctcaactcgtcaatgccgactgggatcttctggtcgtggatgaa
gcccatcatctggcctggagcgaagagaatcccagcccggaatatcaggctattgaagcg
ctggctcgcgcgacgcccgccgtcttgttattaaccgcgacgccagagcagctcggccag
caaagccactttgcgcgattgcgcctgctcgatcccaatcgcttccacgactatcaggaa
tttgttgccgaacagcagcagtatcgtccggtcgccgatgccgtcaccctgctattggcg
ggggaaaaggcccaagcggctgaattgaatgcccttagcgacctgctcggcgaacaggat
atcgaaccgctgctaaaagccattaatagcgatagcgatgacaacctgaaagcgcgccag
gaactgatcactatgttaatggaccgccacggcaccagccgcgtgctgttcaggaacacg
cgtcagggggtgaaaggtttcccgcagcgcatcctgcatcaaatccgtctgccgttgccg
gcgcaataccaaacggccattaaagtggccggcattatgaatgccaataagccgctggaa
tcgcgcgcacgcgacatgttgtatccagaacaaatttatcagcagttcgaaggagatgac
gccacctggtggaatttcgatcctcgcgtggaatggctgctgaactacctgactgccaac
cgcgatgaaaaagtgctggttatctgtgcgcaggcgaccaccgcgctccagctagagcag
gtgctgcgcacgcgtgaagccatccgcgccgccgtcttccatgaagggctctcaattctg
gaacgcgaccgtgccgccgcttatttcgcctccgaagaagaaggcgcgcaggtgctgatc
tgttcagagattggctcagaaggccgtaacttccagtttgccagccatttaatcatgttc
gatctgccattcaatcccgatttgctagagcagcgtatcggtcgcctggatcgtatcggt
caggcgaaagaaatccagattctggtgccctatttggaaaatacggcgcaggccttactg
gtgcgctggtatcatgaaggattagactcgtttgaacacacctgcccaaccgggcgtacc
atctatgatgcgcatcatacgtcgttgcttgagcgattaacgacggtcggtgagcagcaa
gggttagacgactttattcaggcgtgccgccaacagcacgacagcctcaagcagcaactc
gaacagggacgcgatcgtctgctggaaatgcattctcatggcggtgaacaggctcagcgg
ttggcgcaggccattgccgagcaggataatgacgtcaatttagtcacattcgcgctaaac
ctgtttgatattgtgggtattaatcaggaagatcgcagcgataacctcatcattctgacg
ccttccgatcatatgctggtgcctgattttcctggcttaccgcaggacgggtgtaccatc
accttcgatcgcgatcaggcgctttcccgcgaagacgcccagtttatcagttgggaacat
ccgctcattcgtaacgggctcgatcttattctgtccggtgataccggaagttgtgcggtt
tctttgttgaaaaataaggcgttacccgtcggcacgctgctggcggaactgatttatgtc
gtcgaagcacaggcgccgaaacacctgcaactgacccgttttctaccgccaacgccagtg
cgattattaatggatagtaaaggcaacaatttggccgaacacgtcgaattcgagagtttt
aaccgccagctcaacgcgataaatcgccatatgtctagcaagctggtgaacgcggtacag
cccgatgttcacgctatgttgcaacaggcggaaacgttggtagaaacgcaggcacgtcag
ctcattactgaagctcaggagcaggccgacctgcaattgcgccgcgagttggaacgtttg
gaagcgctgaaagccgtcaacccgaacatccgtgaagatgagctgaccgcattggaaaac
caacgtgagcaggtgctgagtaacctgcacgaagccaactggcgtttggatgcaatccgc
ttggtggtggtaacacatcagtaa
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