Pectobacterium cacticida: OI450_16735
Help
Entry
OI450_16735 CDS
T08693
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcac
Pectobacterium cacticida
Pathway
pcac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OI450_16735 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcac03021
]
OI450_16735 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcac03400
]
OI450_16735 (rpoC)
Enzymes [BR:
pcac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OI450_16735 (rpoC)
Transcription machinery [BR:
pcac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OI450_16735 (rpoC)
DNA repair and recombination proteins [BR:
pcac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OI450_16735 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UYX06524
LinkDB
All DBs
Position
complement(3672899..3677122)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELTETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEIKTIEGEVTHRTSLIDTTVGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEQWCDLLEENSVDAVKVRSVVSCETDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
INAKFVMNSNNKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVNGGETVANW
DPHTMPVITEVSGNIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGSGKDLRPALKI
VDDKGEDVLIPGTDMPAQYFLPGKAIVQLEDGVKISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GEMVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGSTEFLEGEQAEVSRIKIANRQLEAEGKIPATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQSGETPV
APQVSADEASANLAELLNAGFGSSDDK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgcgctggcctcgccagacatgatccgttcctggtcttttggtgaagtcaaaaaa
ccagaaaccatcaattaccgtacgttcaagcctgaacgtgacggccttttttgcgcccgt
atctttgggccagtaaaagactatgagtgcctgtgcggtaaatacaagcgcttgaaacac
cgcggtgtcatttgtgaaaagtgcggtgttgaagttacccaaactaaagtacgccgtgag
cgtatgggccacatcgaactggcctccccgactgcgcacatctggttcctgaagtcgctg
ccatcgcgtatcggtttactgctggatatgccgctgcgtgatatcgagcgggtgctgtat
tttgaatcttatgttgtgattgaaggcggcatgaccaaccttgagcgccgtcagatcctg
actgaagagcagtatctggatgcgctggaagagttcggtgatgaattcgacgcaaaaatg
ggtgccgaagccatccaagccctgctgaagaatatggacctggagcaggaatgcgagcag
ttgcgcgaggagctgaccgaaaccaactccgaaaccaaacgtaagaagctgacaaagcgc
attaagctactggaagcgttcgttcaatctggtaacaagccggaatggatgatcttgacc
gttttgccagtgctgccacccgatctgcgtccattagttccgctggatggtggtcgtttt
gcaacgtctgacctgaacgatctgtatcgtcgcgtaattaaccgtaacaaccgtttgaaa
cgtctgctggatctggcggcgccggatatcattgtccgtaacgaaaagcgtatgttgcag
gaagcggttgatgcactgttagataatggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcccctgaaatccttagccgatatgattaagggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtcatcaccgttggtccatac
ctgcgtctgcaccagtgtggtttgccgaagaaaatggccctggaactgttcaaaccattc
atctacggcaagctggagctgcgtggtcttgctaccacgattaaagccgccaagaaaatg
gttgagcgtgaagaagccgtcgtatgggatatcctggacgaagtcatccgtgaacatcca
gtattactgaaccgtgcaccaacactgcaccgtttgggtattcaggcatttgaaccggta
ctgatcgaaggtaaagctatccagttgcacccactggtttgtgcggcctataacgccgac
ttcgacggtgaccagatggctgtgcacgtaccgctgacgttggaagcccagttggaagcg
cgtgcgttaatgatgtcgaccaacaacatcctgtctccggcgaatggtgagccaatcatc
gttccttctcaggacgtagtattaggtctgtactacatgacgcgtgactgtgttaacgcc
aagggcgaaggcatggtgcttacggggccgaaggaagctgaacgtgtctatcgtgctggt
ctggcttcactgcatgcgcgcgtcaaagtgcgaatcaccgaagaaatcaagaccatcgaa
ggtgaggtcactcaccgtacatcgctgattgatacgacggtcggtcgcgccattctctgg
atgatcgtgccgaaggggttgccattttcaatcgtcaaccagccgctgggcaagaaagcg
atctccaaaatgctcaatacctgttaccgcattttgggcttgaaaccaacggttatcttt
gccgaccagatcatgtacaccggctttgcttacgccgcgcgctctggcgcttccgtcggt
atcgatgacatggttatcccagctaagaaggcggggatcatcgaagaagccgaaaccgag
gtcgctgagatccaggagcagttccaatctggtttggtgacggcgggtgaacgttataac
aaagtgatcgatatttgggcggcggcgaacgaacgtgttgctaaagcgatgatggaaaac
ctgtccgttgaggatgtggttaaccgtgatggcgttgttgagcaacaggtgtctttcaac
agtatctttatgatggctgactccggcgcgcgtggttctgcggcacagatacgtcagttg
gccgggatgcgtggtttgatggcgaaacccgatggttccatcatcgaaacgccgattacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtttggcggatacggcactgaaaacggcgaactccggttatctgacgcgccgtctg
gttgacgttgcgcaggatcttgtcgttaccgaagacgattgtggtacccacgaaggtatt
atgatgacgccagtgatcgagggtggtgatgttaaagaaccactgcgtgagcgtgttctg
gggcgtgtgacggctgaagacgtcatcaaaccgggtacagcggacattctggtgccacgt
aacaccttgctgaatgaacagtggtgtgacttgctggaagagaattccgttgacgccgtc
aaagtgcgttcagtagtgagttgcgaaacggacttcggcgtttgtgccaaatgttacggg
cgtgacctggctcgtggccatatcatcaacaagggtgaggccatcggggtcatcgcggca
cagtccatcggtgaaccgggtacacagttaaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcggctgaatccagcattcaggtgaagaacaagggtagcctgaaactg
ataaacgccaaattcgttatgaacagcaacaataaattggtgattacttcacgtaatacc
gaattgaaactgattgatgaatttgggcgtacgaaagaaagctataaagttccttacggt
gcggttatggccaaaggcgatggtgccgaggttaacggcggtgaaaccgtcgctaactgg
gatccgcataccatgcctgtcatcacggaagtgagcggtaacattcgtttcaccgacatg
atcgatggccagacgattacgcgtcagaccgatgaactgaccggcttgtcttctatcgtg
gttctggatagcgcagagcgtaccggtagtggtaaagacctgcgcccggcgctgaaaatc
gttgatgataaaggcgaagatgttctgatccctggtactgacatgccagcgcagtacttc
ctgccgggtaaagcgatcgtccaattggaagatggcgtgaaaatcagcagcggtgatacg
ttggcgcgtattcctcaggaatctggcggtaccaaggatattaccggtggtctgccacgc
gtagccgatctgttcgaagcgcgtcgtccgaaagagccggctattctggcagagatcagc
ggtatcatttccttcggtaaggaaactaagggcaaacgtcgtctggtgatcaccccggtt
gacggtagtgagccttacgaagagatgattccaaaatggcgtcagctcaacgtgttcgaa
ggtgaaatggtcgagcgcggcgatgtggtttccgatggtccagagtctccgcacgatatt
ctgcgtctgcgtggtgtacatgcggttacgcgttatatcaccaacgaagtgcaggaagtc
taccgtctgcaaggcgttaagattaacgataagcacatcgaggtcatcgttcgccagatg
ctgcgtaaagggactatcgttagcgcaggcagcacggaattcctcgaaggcgaacaggcg
gaagtgtctcgtatcaagatcgccaaccgtcagttggaagcggaaggtaagatcccggca
acgtacagtcgcgatctgctggggattaccaaagcgtctctggcgaccgagtccttcatt
tctgcggcatcgttccaggaaaccacgcgcgtattgaccgaagcggcggtagccggtaaa
cgtgatgagctgagaggcttgaaagagaacgttatcgtaggtcgtctgatccctgcgggt
acgggttatgcgtatcatcaggatcgcatgcgtcgtcgtcagtccggggaaacgccagtc
gcacctcaggtgagtgccgatgaagcgtctgctaacctggctgagctgttgaacgcaggt
tttggtagcagtgacgacaagtaa
DBGET
integrated database retrieval system
