Physeter macrocephalus (sperm whale): 102973170
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Entry
102973170 CDS
T06011
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102973170 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
102973170 (EDC4)
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102973170 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
102973170 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
102973170
NCBI-ProteinID:
XP_007125984
Ensembl:
ENSPCTG00005021959
UniProt:
A0A2Y9FL09
LinkDB
All DBs
Position
Unknown
AA seq
1400 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVPDPLCSGDGT
STNKPGLRAMPPINLQEKQVICLLGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHP
AREDFAFPTAFGESRPELASEGLGSATHGSQPDLRRIVELPAPADFLSLSGETKPKLMTP
DAFMTPSASLQQIAASPSSSSSSSSSSLTAVSAMSSTSAVDPSLPSRPPEELTLSPKLQL
DGGLTMSSSSSLQASPRSLLPGLLPSPADKLPPKGPGQVPTAASTLSLELQEVEPLGLPQ
ASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAASALHLLSP
RPRPGPELGPQLSLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETCSSL
AESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTKVPT
PRLPAKDWKTKGSPRASPKLKRKGKKDDGDSSVGSRLTEHQVAEAPEDWPALIWQQQREL
AQLRHSQEELLQRLCTQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQLQE
QLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEGSM
KENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSF
RLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVRAEVQ
HQLHVAVGSLQEAILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPATHLDC
QAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVLLSL
IQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSL
GKAARRLSLMLHGLMTPSLP
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggcccgcggggggtcccagtgcagagagccagcgaccatctaatgcc
tacaatggagatctcaatgggctcctggtcccagaccccctctgctcaggtgatggtact
tcaacaaacaagcctggtctccgagccatgccacctattaacctgcaggaaaagcaggtc
atctgcctcttaggagacgacagttccacctgcatcgggattttggccaaggaggtggag
attgtggccagcagtgactctagcatttcgagcaaggcacgggggagcaacaaggtgaaa
atccagcccgtcgccaagtatgactgggagcagaaatactactatggcaacctgattgct
gtgtccaactctttcttggcctatgctattcgggctgccaacaacggctcagcgatggta
cgggtgatcagtgtcagcacttcagagaggaccctgctcaaaggcttcacaggcagcgtg
gctgatctggcctttgcacacctcaattccccacagctggcctgcctggatgaggcaggc
aacctgtttgtgtggcgcttggccctggttaatggcaaaattcaagaggagatcttggtc
catatccgacagccagagggcactccactgaaccacttccgcaggatcatctggtgcccc
ttcatccccgaagagagtgaggactgctgtgaggagggcagcccaacggtggccctgttg
catgaggaccgggctgaggtatgggacctggatatgctccgctccaaccacagcacctgg
cccgtggatgtcagccagatcaagcagggcttcatcgtggtaaaaggccacagcacatgc
ctaagtgaaggggccctctcacctgatgggactgtcctggctaccgcaagtcatgatggc
ttcgtcaagttctggcagatttacatcgaggggcaggatgagcctaggtgtttgcacgag
tggaagcctcacgatgggaggcccctctcctgcctcctgttctgtgacaaccacaagaaa
caggatcctgaggtccctttctggaggttcctcattactggtgctgaccagaatcgggag
ctgaagatgtggtgcacggtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagctcagtgagtgtgccccccagcctcaaggtttgcctggacctctcagcagaa
tacctgattctcagcgatgtgcaacggaaggtcctctacgtgatggaactgctgcagaac
caggaggagggccgtgcctgcttcagctccatctctgagttcctgctcacccaccctgtg
ctgagcttcggtatccaggttgtgagtcgctgccggctgcggcacactgaggtgctgcca
gccgaggaggagaatgacagcctaggggctgatgggacccatggagctggtgccgtggag
tctgcagccggtgtgctcatcaagctcttctgtgtgcacactaaggcattgcaagatgta
cagatccgcttccagccacagctgaaccctgacgtggtggccccgctccccacacaccct
gcccgtgaggactttgcttttcccacagcatttggagagtctcgaccagaactggcttct
gagggcctgggatctgccactcacggctcccagcctgacctccgacgcatcgtggagctg
cctgcacctgccgacttcctcagtctgagcggtgagaccaagcccaagctgatgacacct
gacgccttcatgacacctagcgcctccctgcagcagatcgctgcgtctcctagcagcagc
agcagcagcagcagttcctctcttacagcggtgtctgccatgagcagtacttcggctgtg
gacccctccctgcccagcaggccacctgaggagctgaccttgagccccaagctacagctg
gatggcggcctgacaatgagcagcagcagcagcctgcaggcaagcccacgtagcctcttg
cctggcctgctcccaagtccggccgacaaattgcctcccaaagggcccgggcaggtgcct
actgctgcctctacactatccctggagctgcaggaagtggagcccctggggctaccccag
gcttcccccagccgcacccgctcccccgatgttatctcctcagcttccaccgccttgtcc
caggatatccctgagatcgcatctgaggcactgtcccgtggctttggctcttccgctcct
gagggcctggagccagacagtatggcctcagctgcttcagcactacacctgctgtctcca
cggccccggccgggacccgagcttggcccccagcttagcttggatggaggccctggggat
ggggatcggcatagtaccccttccctcctggaggcagccttgacccaggaggccacggcc
cctgacagtcaggtctggcctacggcaccagacattactcgtgagacctgcagcagcctg
gcagagagcccccggaatggcctccaggaaaagcacaagagcctggcctttcaccgacca
ccttatcacctgctgcagcaacacgacagtcaggacgccagtgccgagcaaagcgaccac
gatgacgaggtggccagcctggcctctgctgcagggggctttggcaccaaagttcccact
ccacgtcttcctgccaaggactggaagaccaaaggatcccctcgggcctcacctaagctc
aagcgaaagggcaaaaaggatgacggggattcgtccgtgggatcccggctcacagagcac
caggtggcagaggcccctgaggactggccagcactaatttggcaacagcagagagagctg
gcgcagcttcggcacagccaagaagagctgctacaacgtctgtgcacccagcttgaaggc
ctgcagagcaccgtcacgggccacgtagaacgtgccctagagtcacggcacgagcaggag
cagcggcgactggagcgggcactggctgagggacagcagcgtggtgggcagctgcaggag
cagctgacgcaacagctgtcccaagcgctatcttcagctgtggctgggcggctggagcgc
agcatacgggatgagatcaagaagacggttcctccgtgtgtgtctaggagtctggagccc
gtggcaggccaactgagcaactcggtggccaccaaactcacagccgtggagggtagcatg
aaagagaatatctccaagctgctgaagtccaagaacttaacagatgccattgcccgagca
gccgcagacacgttacaggggccaatgcaggccgcctaccgtgaagccttccagagcgtg
gtactgcccgccttcgagaagagctgccaggccatgttccagcagatcaatgatagcttc
cgactgggcacgcaggaatacttgcagcagctggagagccacatgaagagccgaaaggca
cgagaacaggaggcgcgggagcccgtgctggcccagctgcggggcctggtcagcacactg
cagggggccactgagcagatggcagctactgtgtccagcagcgttcgggctgaggtgcag
caccagctgcacgtggctgttggcagcctgcaagaggcaattttagcacaggtgcagcgc
attgttaagggtgaggtgagtgtggcactcaaggagcagcaggctgccgtcacctctagc
atcatgcaggccatgcgctcagccgctggcacacctgtccctgccacccacctcgactgc
caagcccagcaagcccatatcctgcagctgctgcagcagggccacctcaatcaggccttc
cagcaggccctgacagctgccgacctgaacctggtgctgtacgtgtgtgaaactgtggac
ccaggccaggtttttgggcagccaccttgccccctctcccagcctgtactcctttcactc
atccagcaactggcctctgaccttggcactcgaactgacctcaagctcagctacctggaa
gaggctgtgatgcacctggaccacagtgaccccatcactcgggaccacatgggctccgtc
atggcccaggtgcgccagaagctctttcagttcctgcaggcggagccacacaactcactt
ggcaaagcggcccggcgtctcagcctcatgctgcacggccttatgacccccagcctccct
tag
DBGET
integrated database retrieval system
