Physeter macrocephalus (sperm whale): 102973701
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Entry
102973701 CDS
T06011
Symbol
CSTF2T
Name
(RefSeq) cleavage stimulation factor subunit 2 tau variant
KO
K14407
cleavage stimulation factor subunit 2
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102973701 (CSTF2T)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
102973701 (CSTF2T)
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102973701 (CSTF2T)
U7-dependent histone pre-mRNA processing factors
102973701 (CSTF2T)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
DUF8400
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102973701
NCBI-ProteinID:
XP_007122691
Ensembl:
ENSPCTG00005018419
UniProt:
A0A2Y9FGU9
LinkDB
All DBs
Position
20:44786410..44790266
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AA seq
623 aa
AA seq
DB search
MSSLTVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
IMDPEIALKILHRKIHVTPLIPGKSQSVSGPGPGLCPGPNVLLNQQNPPAPQPQHLARRP
VKDIPPLMQTPIQGGIPAPGPIPAAVAGPGPGPGPGPLTPGGAMQPQVGMPGVGPVPLER
GQVQISDPRAPMSRGPMTAGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGP
PMHHASGHDSRGPSSHDMRGGPLADPRLLIGEPRGPMIDQRGLPMDGRGSRDSRGMETRA
METEVLETRVMERRGMETCAMEARGMEARGMDARGMEMRGPGPSSRGPMTGGIQGSGPIN
MGAGGPQGPRQVPSISGVGNPGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAGI
QGTGMQGAGMQGAGMQGAGKQAGGQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAM
LPPEQRQSILILKEQIQKSTGAS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtttgacggtgagagacccggcaatggatcgatcactgcgttccgttttcgtg
gggaacattccgtatgaggcaactgaggagcagttgaaggacattttctccgaggttggt
tccgttgtgagtttccggctggtatacgatagagagacgggaaaacctaagggttatggc
ttctgcgagtaccaagaccaggagaccgcgcttagtgccatgcggaaccttaacgggcgg
gagttcagcgggagagcgcttcgggtggacaatgctgccagtgaaaagaacaaggaggag
ttaaagagcctagggcctgcagcgcccatcattgactcaccctatggggaccccatcgat
ccagaagatgcccctgagtcaattaccagagcagtcgctagtcttcccccggagcagatg
tttgagctgatgaagcagatgaagctctgtgtccaaaacagtcaccaggaagctcgaaat
atgttacttcaaaacccacagctggcttatgcgctgttgcaggcgcaagtagtgatgaga
atcatggatccagagattgctctgaaaattctgcatcgcaaaatacatgtcacaccactc
atcccaggcaaatctcaatccgtttctggccctggccctggcctttgcccaggacctaat
gttctgctgaaccagcagaatcctccagcccctcagcctcagcatttggccagaagacct
gtgaaagacatccctcctctgatgcagacccctatccagggtggaattccagccccgggc
ccaattccagctgcagttgctggccctggccctggccctggccctggccccttaactcct
ggtggagcaatgcagccccaagttggaatgccaggggttggtccggtgcccttagagcgg
ggacaagtgcagatatcagatcctagagctcctatgtctcgtggacccatgactgctggt
ggcttacctcctcgaggactgttaggggatgctccaaatgacccacgtggaggaactttg
ctttcagtcactggagaagtagagcccagaggctatcttggcccaccacatcagggtcct
ccaatgcaccatgcatctggtcatgacagccggggcccttcctcacatgacatgagggga
gggccattagcagatcccagactgctcattggagaacccagaggacccatgatagatcaa
aggggtctacctatggatggtagaggtagcagagattctcgagggatggagactcgagcc
atggaaactgaggtcttagagacacgagtaatggagagaagaggaatggaaacctgtgca
atggaagccagagggatggaagcgagaggcatggatgcaagaggaatggagatgaggggc
cctggccccagttcaagaggccctatgactgggggaattcagggttctggtcctattaat
atgggggcaggtggtcctcagggacccagacaggtcccaagcatttcaggggtgggaaat
cctggagctggcatgcagggggcaggtatgcaaggagcaggcatgcagggggcaggtatg
caaggagcaggcatgcagggggcaggtatgcaaggagcaggcatgcaaggggcgggtata
caagggacaggcatgcagggggcgggcatgcagggagcaggcatgcaaggggcaggcaag
caagctggaggccagcctagcagttttagtcctgggcagagccaggtaaccccacaggat
caagaaaaggcagctttgatcatgcaggttcttcaactgactgcagatcagattgccatg
ctgcctcctgagcaaaggcagagtatcctgattttaaaggaacaaatccagaaatctact
ggagcttcttga
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