Physeter macrocephalus (sperm whale): 102973869
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Entry
102973869 CDS
T06011
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
pcad
Physeter macrocephalus (sperm whale)
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcad03021
]
102973869 (SCAF4)
03041 Spliceosome [BR:
pcad03041
]
102973869 (SCAF4)
Transcription machinery [BR:
pcad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102973869 (SCAF4)
Spliceosome [BR:
pcad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
102973869 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102973869
NCBI-ProteinID:
XP_023975861
Ensembl:
ENSPCTG00005002739
UniProt:
A0A2Y9SB14
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All DBs
Position
8:complement(2910978..2967630)
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AA seq
1136 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVTENVTNNEGSPPPPVKVSSEPSQATTNSIPAVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPQPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDAAAAAATAAATAPAAAAAPP
APAAAVPSVAATAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMAIQQDPVHHQVPL
PPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQTSFQAQSEPLTQKAHQEMEVEQPC
IQEVKRHLSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQE
RRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMI
PPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVT
YIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPK
PLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPP
PPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPINIPNSTIAGINEDTTKDLS
IGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVI
GLQAPSTGLLGARPGLIPLQRPPGMPPPHLPRFPLMPPRPMPPHMMHRGPPPGPGGFGMP
PPHGMKGPYPPHGPFVRPGGVPGLGGPGPGPGGPEDRDGRQPPPQQPPPAPQPQQQPPTQ
PPQPPPTQPQPFRNDNRQQFTSGRDQERFGRRSFGNRVENDRERYGNRNDDRENSNRERR
EWGRRSPERDRHRDLEERNRRSSGHRDRERDSRDRESRREKEENRGKEKPEVTDRAGGNK
TVEPPISQVGNVDTVSELDKGESESAVVKPSEELPAEATSSVEPEKDSGSAAEAPR
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaagagctcttttcacttatggatatgaaacctccc
atctctcgagccaagatgattctcatcacgaaagctgctattaaagctattaagctttat
aagcatgtagttcaaatagtagaaaagttcatcaaaaagtgtaaaccagaatacaaggtt
ccgggattatatgtaatcgactcaattgtgagacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataactgccacattccaatatttgtat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctgaacctttggcaaaaaaat
ggagtattcaaaattgaaattattcaaccgcttttggacatggcagcaggaaccagtaat
gccgccccagtaacagaaaatgttactaataatgaaggttcacctccacctccagttaaa
gtttcttctgaaccctcacaagccactacaaactccataccagctgtaccacagttgccc
agctctgatgcttttgctgctgtggcccaactgtttcagacaactcaaggtcaacagctt
cagcagatccttcagacttttcaacagcctccaaaaccacagtctcccgccattgacaat
gctgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgaacaaaaagctgctttcccccaacctgaacaaaaaactgcatttgacaagaagcta
cttgatagatttgattatgatgatgagccagaagctgtggaagaatcaaagaaagaagat
gctgccgccgccgctgccaccgctgccgccacagcacctgctgctgctgctgcgccccct
gcacctgctgctgctgtgccttctgttgctgcaaccgctgcttctcctccacaggcaccc
tttggatttcctggagatggcatgcagcaaccagcatatacccagcaccaaaacatggat
cagtttcaacctcgaatgatggcaatacagcaggatccagtgcaccatcaggttccactt
cctcctaatggacagatgccaggatttggccttcttcctacacctccatttcctcccatg
gctcagtccgtgattcctccaactccacccgtgcagcagcctttccaaacttcctttcag
gcacaaagtgaaccacttacacaaaaagcacatcaggaaatggaagtagaacaaccttgt
attcaagaggttaagcggcacctgtccgataacagaaagtcaagatctagatcagcgtcc
aggtcaccaaaaaggagacgatctcgatctggttctagatctcgaaggtctcgtcatcga
cgttctcgatctcggtccagagatagacgccgacattctcctagatctcgatcccaagaa
agaagggatcgggaaaaagaaagagagcgccgacaaaaaggccttcctcaaatcaaacca
gaaactgctagtgtttgtagtactacactctgggtgggacagctggacaaaaggactact
cagcaggatgttgccagtctcttagaagaatttggtccaattgaatcaattaatatgatt
cctcccagaggttgtgcctatattgttatggttcataggcaagatgcttaccgtgccctg
cagaaactgagccgaggaaactataaagtgaaccagaaatccataaagattgcctgggcc
ttaaacaaaggaataaaggcagattataagcagtattgggatgtagaacttggtgttact
tatattccgtgggacaaagtcaagcctgaagaactggagagtttttgtgaaggaggaatg
ttggacagtgatacacttaatccagattggaagggaattcccaaaaagcatgaaaatgaa
gttgctcaaaatggaggggcagaaacctcacacacagaaccagtttcacccatacctaag
cctttacctgtgcctgtcccacctattcctgttcctgcacctataacagtaccacctcca
caggtcccaccacatcagccgggacctcctgtagttggtgctctccagccacccactttc
acgcctcctttgggaattccccctccaggctttggtcctggtgttcctcctcctccacct
cctccaccatttttgcgcccaggattcaacccaatgcatttaccaccaggttttcttcct
cctggacccccacctcctataactccaccagtatccattcctcctcctcacactccacca
ataaacatcccaaactctactatcgctggtataaatgaagacactacaaaagacttatct
attggaaatcccattccaacagtggtgtctggggctagaggaaacgccgagtctggtgac
agtgtgaaaatgtatggttctgctgtgccacctgctgcacccacgaatctgcccacccct
cctgtaacccagcctgtttcacttcttggtactcaaggagttgcacctggccctgtaatt
gggctccaagccccatccactggtcttcttggtgcccgacccggcctgatcccactccag
cgcccgccaggaatgcctccacctcacctgccacgcttccctttgatgccgcctcgtccc
atgcctccgcatatgatgcatagaggtccgccaccaggccccgggggcttcgggatgcct
ccgcctcatggaatgaaaggtccctatcctccccacggcccctttgtccggcccggtgga
gtgccagggctcgggggcccagggccaggcccagggggtcccgaggacagagacggaagg
cagccgccgccgcagcagccgccgccggcaccgcagccgcagcaacagccgccgacgcag
ccaccgcagccgccgccgacgcagccacagccgtttagaaacgataacaggcagcagttc
acttcaggtagagaccaagaaaggtttggaagaagatcttttggaaatagggtggaaaat
gaccgggaacggtatgggaaccgtaatgatgatagagagaatagtaatcgtgaaaggaga
gagtggggaagaaggagccctgagcgggacaggcacagagacttggaagagaggaataga
cgctctagtgggcatcgagacagagagagagattctagagatagagagtctcgtagagag
aaggaggaaaaccgaggcaaggagaagcccgaggtgacagacagggcaggcggtaacaaa
accgttgaacctcccattagccaagtgggaaatgtagacactgtttcagaacttgataag
ggggagtctgagtctgcagttgtaaaaccttctgaagagttacctgctgaggctacctca
tccgttgaacctgaaaaggattctggctcagcagccgaggctcctcgttag
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integrated database retrieval system
