KEGG   Physeter macrocephalus (sperm whale): 102974268
Entry
102974268         CDS       T06011                                 
Symbol
SKIC8
Name
(RefSeq) SKI8 subunit of superkiller complex protein
  KO
K12602  WD repeat-containing protein 61
Organism
pcad  Physeter macrocephalus (sperm whale)
Pathway
pcad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102974268 (SKIC8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcad03019]
    102974268 (SKIC8)
Messenger RNA biogenesis [BR:pcad03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     102974268 (SKIC8)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_THOC3 WD40 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR19_1st eIF2A Beta-prop_Aladin Beta-prop_Vps41 WD40_RFWD3 Beta-prop_ACSF4 Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_NWD2_C Beta-prop_EIPR1 NBCH_WD40 Beta-prop_SPT8 Tricorn_2nd Beta-prop_IFT140_1st Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_HPS5 Cytochrom_D1 Beta-prop_WDR75_2nd PROPPIN Beta-prop_DCAF12 WD_LRWD1 VPS8_N Beta-prop_NUP159_NUP214 WDR54 Beta-prop_RIG_1st GSDH WD40_like Beta-prop_IFT122_2nd DUF2415 Vgb_lyase Nucleoporin_N
Other DBs
NCBI-GeneID: 102974268
NCBI-ProteinID: XP_054944134
UniProt: A0A9W2WY36
LinkDB
Position
11:69146580..69165870
AA seq 325 aa
MARAGGRSCLAFSPSSLVKEMTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSL
DDLVKVWKWRDEKLDLQWSLEGHQLGVMSVDISHTLPIAASSSLDAHIRLWDLENGKQIK
SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVEGGKKEYSLDTRGKFILSIAYSPDG
KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ
HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV
KYNGNGSKIVSVGDDQEIHIYDCPI
NT seq 978 nt   +upstreamnt  +downstreamnt
atggcccgggctggagggcggagctgtctggcctttagcccttcatccttggttaaggaa
atgaccaaccagtacagtattctcttcaaacaagagcaagcccatgatgatgccatttgg
tcagttgcctgggggacaaacaagaaagaaaactctgagacggtggtcacaggatccctg
gatgacctggtgaaggtctggaaatggcgcgatgagaagctggacctacagtggagtctg
gagggccatcagctgggtgtgatgtctgtggacatcagccacaccctgcccattgctgcg
tccagttctcttgatgctcatattcgtctctgggacttggaaaacggcaaacagataaag
tctatagatgcaggacctgtggatgcctggactttggccttctctcctgattcccagtat
ctggccacaggaactcatgtggggaaagtgaacatttttggtgtggaaggtgggaaaaag
gaatattctttggacacaagaggaaaattcattcttagtattgcatatagtcctgatggg
aagtatctggccagtggagccatagacggaatcatcaatatttttgatattgcaaccggg
aaacttctgcacacgctggaaggccatgctatgcccattcgctccttgactttttccccg
gattcgcagctccttgtcactgcttcagatgatggctacatcaagatctatgatgtacaa
cacgccaacttagctggcacattgagtggccacgcatcctgggtgctgaacgttgcattt
tgtccggatgacacacactttgtttccagctcatctgacaaaagtgtaaaagtgtgggat
gttggaacgaggacttgtgttcacaccttctttgatcaccaggatcaggtctggggagta
aaatacaatggaaatggctcaaaaattgtgtctgtcggagatgatcaggaaattcacatc
tacgattgtccaatttaa

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