Physeter catodon (sperm whale): 102974712
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Entry
102974712 CDS
T06011
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X2
KO
K13191
RNA-binding protein 16
Organism
pcad
Physeter catodon (sperm whale)
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcad03021
]
102974712 (SCAF8)
03041 Spliceosome [BR:
pcad03041
]
102974712 (SCAF8)
Transcription machinery [BR:
pcad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102974712 (SCAF8)
Spliceosome [BR:
pcad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102974712 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
DAXX_hist_bd
Motif
Other DBs
NCBI-GeneID:
102974712
NCBI-ProteinID:
XP_007114578
Ensembl:
ENSPCTG00005004842
UniProt:
A0A2Y9F3S5
LinkDB
All DBs
Position
10:complement(12057145..12237584)
Genome browser
AA seq
1266 aa
AA seq
DB search
MDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLY
VIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFK
SEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITN
TDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAA
AAASTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPASQLSHVSESVNNSIFHQIA
EQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSVSPSQGSSQQHFLEPEANLDD
SIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRK
RKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQV
DKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVI
KIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWESVKS
SEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSLVPPAFPVSMP
VPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPPLSMTP
ETVKDVGFGSLVLPGGSVASSLATSTLPAGSVFNPPTKQAEPEEKVPHLIDHQISSGENT
RSVIPNDVSGGSAILGGQPPNVTNNSGILGVQRPNVSSNNEILGVRPSNVSNSSGIIGAQ
PPNILNNSGILGIQPPSVSGSSGLLGMLPPNIPNNSGLIGVQPPSVPNTSGLLGTQPPAG
PQNLPPLNLSNQRMPAMPMIDIRPGLIPQTPGPRFPLMQPGIPPQRGLPPPAVFDSALHP
PPRGPFAPGDIFSPPERPFLVPGRQSVDNVANPEKRIPLGNDNIQQEGDRDYRFPPIETR
ETISRPPPVDVRDVVGRPVDPREGPGRPPLDGRDHFGRPPVDIRENLVRPGIDHLGRRDH
FGFTPEKPWGHRDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEV
HRDFDDRRRPWERQRDRDDRDFDFCREINGNRFGRDRIQNTWVPPPHARVFDFFEGATSQ
RKGDNVPQVNGENTERHAQPPPLPAQSDPELYEKLTSSSEINKEKSDTVADIESEPVVES
TETEGT
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggacacaagaagcatattgtattccctgaatgactacaagccacccatttctaaagcg
aaaatgacccaaattactaaagcagccatcaaagctattaagttctataaacatgtggta
cagagtgttgagaaattcattcagaaatgtaaaccagaatacaaggtacctggactttat
gttattgactctattgtacgacaatctcgacatcagtttggtcaagaaaaggatgtgttc
gcacccagatttagtaataacatcattagcactttccagaatttatatcgttgccctgga
gacgacaagagtaaaatagtgagagtattaaacttatggcagaagaataatgtatttaaa
agtgagattattcaacctcttttggatatggcagcggggattcctcctccagttgtcaca
cctgttttggccagtactactgctgctatgagcaataccccaggaactcctgtgacacct
gttactccagccaatgtggtccaaggtttacctgatccgtgggtgtctcagataacaaat
acagatacacttgcagctgtagctcagatcttacaaagtcctcaaggccaacagcttcag
cagttaatacagactttacagatacagcagcagaagcctcagccttccatcttgcaagcc
ctggacgccggccttgtggtccagctgcaggctcttacagcacagctcacagcagcggct
gcagcagccagcacccttaatcccctagaacagggagtgtcttttaacaagaagttgatg
gataggtttgattttggggaagattctgagcatagtgaagaacccaaaaaggaaattcca
gcttctcaactttctcatgtttcagaatctgtgaacaattccatctttcatcagatagca
gaacagctacagcagcaaaatcttgaacatctcagacagcaactcctggaacagcaacag
cctcaaaaggcaactcctcaggacagtcaagaaggaacgtttgggtcagagcattccgtg
tcaccatcacaaggaagcagtcaacagcatttccttgaacctgaagcaaatttggatgat
tccatagatattcagcagcaggatatggatatagatgaagggcaagatggagtggaagag
gagatctttgaacaggaagcaaagaaagtggctgttcgctcaagatcaagaacgcattca
cgatctcgttcaagatcaccaagaaaacgaagatctaggtcacgatctggttctcgaaag
cgtaaacacagaaagcgatcacgctctcgctctagagaaagaaaaaggaaatcatcacgt
tcatactcaagtgaaagaagagccagagaaagggagaaagaacgacagaagaagggattg
cctccaattagatctaaaacgttaagtgtatgtagtactactctgtgggttggtcaggta
gacaagaaggcaacacagcaagatttaaccaacctgtttgaagagtttggacagattgaa
tccattaatatgattcctcccaggggctgtgcttatgtctgcatggttcatcgacaagat
gcatttcgggctcttcagaaacttagttccgggtcatataaaattgggtccaaggtcatt
aagattgcttgggctttaaacaaaggtgtaaaaacagaatacaaacaattctgggatgtg
gatcttggagtaacatatataccatgggaaaaggttaaagtggatgacttggaaggtttt
gcagaaggaggcatgattgatcaagaaactgtaaatactgagtgggaaagtgtgaaaagc
tcagaacccgttaaagagacggtccagacaactcagagcccacctccagttgaaaaggag
acagtggtcacaacccaggcagaggttttccctccacctgttgctatgttacagattcca
gtagctccagcagtgcctacagttagtttagtcccaccagcatttcctgtgtccatgcca
gttcctcctcctggattcagtccaattcctccaccgccttttctccgcgcgagttttaac
ccttcacaaccacctcctggtttcatgccacctccagttccaccacctgttgtaccacca
cctgctattccaccagtagtaccaacatctttagtgcagccgccattatctatgactcca
gaaactgtgaaagatgttggatttggtagccttgttttgccaggtggttctgttgccagc
agtcttgctacttccactctgccagctggaagtgtttttaatcctccaactaaacaagca
gagcctgaagaaaaagtacctcatcttatagaccaccagatttcttctggtgaaaacacc
agatcagtgattccaaatgatgtttcaggtggctctgcgattttaggaggacagccgcca
aatgtgacgaacaattctggaattctgggagtccaaagaccaaatgtatcaagtaataat
gaaattcttggagtccggccatctaatgtttccaacagttctgggattattggagcccag
ccaccaaatattctaaataactctggaattttgggaatacagccaccaagtgtgtcgggt
agttctggacttctgggcatgctacccccaaatatacctaacaattccggacttatagga
gtacagccacccagtgttccaaatacttctggacttttgggaacgcagccaccagctggg
cctcaaaacttaccccctttaaatctttctaatcaaaggatgcctgcaatgccaatgata
gacattcgtccaggactaataccacaaacacctggaccaagattccctttaatgcagcct
ggaattccacctcagcggggactccctcccccagcggtatttgattcagctcttcatcca
ccaccccgtggtccttttgctccaggagatatttttagtccacctgaaagaccttttcta
gttcctggaagacaaagtgtagacaatgttgctaatccagaaaaaaggataccacttggg
aatgataacattcaacaggaaggagatagagattaccggtttcctcccatagaaaccagg
gaaaccattagtagacctcccccggtggatgttagggatgtggttggacggcctgtagat
ccaagagaaggtcctggaaggcctccattagatggtagagatcattttggaagacctcct
gtagatattagagagaatcttgtgaggccaggcatagatcatcttggtcgaagagaccac
tttggctttactccagagaagccctgggggcatagagattttgacgagagagagcatcgg
gttcttcctgtctatggtggtccaaaaggcttacatgaagaaagaggtagatttcggtct
ggaaactatcggtttgatcctagaagtggtccttggaacagaggatttggacaagaagtt
cacagagattttgatgaccgcagaagaccctgggagaggcaaagggatagggatgacaga
gattttgatttctgcagagaaattaatggaaatcgttttggacgagatagaattcaaaac
acctgggtcccccctcctcatgctcgggtttttgatttttttgaaggggccacttctcaa
cgaaaaggtgataatgtgcctcaggttaatggtgaaaataccgagagacatgctcagcca
ccacctttaccagcgcagagtgatcctgaactttatgaaaaactgacatcttcaagtgaa
ataaacaaggagaagagtgacacagttgctgatatagagagtgaaccagtggtagaaagc
acagaaactgaggggacataa
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