Physeter catodon (sperm whale): 102975365
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Entry
102975365 CDS
T06011
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad04151
PI3K-Akt signaling pathway
pcad04510
Focal adhesion
pcad04512
ECM-receptor interaction
pcad04820
Cytoskeleton in muscle cells
pcad04926
Relaxin signaling pathway
pcad04933
AGE-RAGE signaling pathway in diabetic complications
pcad04974
Protein digestion and absorption
pcad05146
Amoebiasis
pcad05165
Human papillomavirus infection
pcad05200
Pathways in cancer
pcad05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102975365 (COL4A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102975365 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102975365 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102975365 (COL4A5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
102975365 (COL4A5)
09154 Digestive system
04974 Protein digestion and absorption
102975365 (COL4A5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102975365 (COL4A5)
09162 Cancer: specific types
05222 Small cell lung cancer
102975365 (COL4A5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
102975365 (COL4A5)
09174 Infectious disease: parasitic
05146 Amoebiasis
102975365 (COL4A5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102975365 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcad04147
]
102975365 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
pcad00536
]
102975365 (COL4A5)
Exosome [BR:
pcad04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102975365 (COL4A5)
Glycosaminoglycan binding proteins [BR:
pcad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102975365 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102975365
NCBI-ProteinID:
XP_023983993
Ensembl:
ENSPCTG00005014781
UniProt:
A0A2Y9T0U1
LinkDB
All DBs
Position
21:83654092..83911497
Genome browser
AA seq
1685 aa
AA seq
DB search
MKLRGVSLAAGLFLLALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGSDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGFPGPPG
IQGPAGPTGIPGPIGPLGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGVKGEKGEQGEPGKRGKP
GKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDIGPTGPPGLVIPRPGTGVTVGEKGN
IGLPGLPGEKGERGFPGIQGPPGLPGPPGLAVTGPPGPPGFPGERGQKGDEGPPGISIPG
SPGLDGQPGAPGLPGPPGPPGPHIPPSDEVCEAGPPGPPGSPGDRGLQGEQGVKGDKGDT
CFNCIGTGVSGPPGEPGLPGLPGPPGSLGFPGQKGEKGHAGATGPKGLTGIPGAPGAPGF
PGPKGEPGDILTFPGMKGDKGDLGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIAFKG
ERGPPGNPGFPGLPGNRGPMGPLGFGPPGPPGEKGIQGVAGNPGQPGIPGPKGDPGQTIA
QPGKPGLPGNPGRDGEVGLPGEPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGI
PGPPGAPGTPGRIGLEGPSGPPGFPGLKGEPGFGLPGPPGPPGLPGFKGILGPKGDRGFP
GPQGPPGQAGLDGLPGPKGDIGPNGQPGTMGPPGLPGTGVQGPPGPPGIPGPIGPPGLHG
IPGEKGDPGPPGFDVPGPPGERGSPGIPGAPGPMGPPGSPGLPGKAGASGFPGAKGEMGM
MGPPGPTGPLGIPGRSGVPGLKGDDGLQGQPGLPGPAGEKGSKGEPGLPGLPGPMDPDLL
GSKGEKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLT
GPPGLKGNIGDMGFPGPQGAKGSPGPPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPG
PKGEPGLPGYPGNPGIKGAMGDTGLPGLPGTPGAKGQPGLPGFPGTPGLPGPKGINGPPG
NPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGL
SGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGLQGPPGPPGSPGPALEGPKGNPGPQGPP
GRPGLPGPEGPRGLPGIGGIKGERGNPGQPGQPGLSGLKGDQGPPGLQGNPGRPGLNGMK
GDPGLPGVPGFPGMKGPSGEPGSTGPEGDPGLIGPPGPPGLPGPSGQSIVIKGDAGPPGV
PGQPGLKGLPGLPGPQGLPGPIGPPGDPGRNGLPGFDGAGGHKGDPGLPGQPGIRGLDGP
PGPDGLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGTIQVYEGFSLLYVQGNKRAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLKGQSIQPF
ISRCAVCEAPAVVIAVHSQTIQIPRCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTRISRCQV
CMKRT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcgtggagtcagcctggctgccggcttgttcttactggccctgagtctttgg
gggcagcccgcagaggctgcggcttgctatgggtgttctccaggatcaaagtgtgactgt
agtggtataaaaggagaaaagggggagagaggatttccaggtttggaaggccatccaggt
ttgcctggatttccaggtccagaagggccgccagggcctcggggacaaaagggtagtgat
ggaattccagggccaccaggaccaaaagggatcagaggtcctcctggacttcctggattt
ccagggacaccaggtcttcctggaatgccaggccatgatggggccccaggacctcaaggt
atccccggatgcaatggaaccaagggagaacgtggatttccaggcagtcccggttttcct
ggtttacagggtcctccaggacctcctgggatcccaggtatgaagggagaaccaggtagt
ataattatgtcatcactgccagggccaaagggtaatccaggatttcccggtcctcctgga
atacagggcccagctggtcccactggtataccagggccaattggtccccttggaccacca
ggtttgatgggccctcctggcccaccaggacttccaggaccaaaggggaatatgggctta
aatttccagggacccaagggtgaaaagggtgagcaaggtcttcagggcccccctgggcca
cctgggcagatcagtgaacagaaaagaccaattgatgtagagtttcagaaaggagatcag
ggacttcctggtgaccgagggcctcctggacctccagggatacgtggtcctccaggtcct
ccaggtggtgtgaaaggtgagaagggtgagcaaggagagcctggcaaaagaggtaaaccg
ggcaaagatggagagaatggccaaccaggaattccaggtttgcctggtgatcctggttac
cctggtgaaccaggaagggatggagaaaagggccaaaaaggtgacattggcccaactggg
cctcctggacttgtaattcctaggcctggaactggtgtaactgtaggagaaaaaggaaac
attgggttacctggcttgcctggagaaaaaggagagcgaggatttcctggaatacagggt
ccacctgggcttcctggacctccaggacttgcagttacaggtcctcctgggccccctggc
tttcctggggaaaggggccagaaaggtgatgaaggtccacctggaatttccattcctgga
tctcctggacttgatggacagcctggggctcctggccttccagggcctcctggccctcct
ggccctcacatccctcctagtgatgaggtatgtgaagcaggccctcctggccctccagga
tctccaggtgatagaggactccaaggagaacaaggagtgaaaggtgacaaaggtgacacc
tgcttcaactgtattggaactggtgtttcagggcctccaggtgaacctggtttgccaggt
cttccaggtcccccaggatctcttggtttccctggacagaagggtgaaaaaggacacgct
ggtgcaaccggtcccaaaggattaacaggcataccaggagctccaggcgctccaggcttt
cccggacctaaaggtgaacctggtgacatcctcacttttccaggaatgaagggtgacaaa
ggagatttgggttctcctggagctccaggccttcctggtttacctggcacccctggacag
gatggattgccagggcttcctggccccaaaggagaacctggtggaattgcttttaagggt
gaaagaggtccccctgggaacccaggttttccaggtctcccaggaaatagggggcctatg
ggccctcttggttttggccctccaggcccaccaggtgaaaaaggcatacaaggtgtagca
ggaaatccaggccagccaggaataccaggtcctaaaggtgatccaggtcagaccatagca
cagccagggaagcctggcttgcctggtaacccaggcagagatggtgaagtaggtcttcca
ggtgaacctggactcccaggtcagccaggcttgccaggtatacctggcagcaaaggagaa
ccaggtatccctggaatcgggcttcctggaccacctggtcccaaaggttttcctggaatt
ccaggacctccaggagcacctgggacacctggaagaattggtctagaaggtccttctggg
ccaccaggctttccaggactaaagggagaaccaggatttgggctacctgggccacctggg
cctccaggactcccaggtttcaaaggaatacttggtccgaaaggggatcgtggtttccca
ggacctcaaggtcctccaggacaagctggcttggatgggctacctggaccaaaaggtgac
attggaccaaatggacaacctgggacaatgggacctcctgggctgccaggaacaggtgtt
cagggaccaccagggccaccaggaattcctggaccaataggtccacctggcttgcatgga
ataccaggagagaagggggatccaggacctcctggatttgatgttccaggaccccctggt
gagagaggcagtccagggatccctggagcaccaggtcctatgggccccccaggatcacca
gggctcccaggaaaagcaggtgcctctggctttccaggtgccaaaggtgaaatgggtatg
atgggacctccaggcccaacaggacctttgggaattcctggcaggagtggtgttcctggt
ctcaaaggtgatgatggtttgcagggtcaaccaggacttcctggccctgcaggagagaaa
ggtagtaaaggagagcctggccttccaggccttcctggaccaatggatccagatctgctg
ggctcaaaaggagagaaaggggaccctggcctaccaggtattcctggagttgcagggcca
aaaggttatcagggtttgcctggagacccagggcaacctggactgagtggacagcctgga
ttaccaggaccatcgggtcccaagggtaaccctggtctcccggggaagccaggacttaca
ggacctcctggacttaaaggaaacataggcgatatgggttttccaggcccccagggtgca
aaagggtctcctggacctcctggagttcctggacaacctggctccccaggattacctgga
cagaaaggagaaaaaggtgatcctggtatttcaggcattggtcttccaggtcttcctggc
ccaaagggtgaacctggtttgccggggtacccagggaaccctggtatcaaaggtgctatg
ggagatactggtttgcctggattaccagggacccctggagcaaaaggacaaccaggcctt
cctggattccctggaaccccaggccttcctggaccaaaaggtattaatggtcctcctggg
aaccccggccttccaggagaacctggtcctgtaggtggtggaggtcgtcctgggccacca
gggcctccaggtgaaaaaggcaaaccaggtcaagatggtattcctggaccagctggacag
aagggtgaaccaggtcaaccaggctttggaatcccaggaccccctggacttccaggactt
tctggtcaaaagggtgatggaggattacctggcattccaggaaaccctggccttccaggt
ccaaagggtgaaccaggctttcatggtttccctggtctgcagggtcccccaggccctcct
ggttctccaggtccagctctggaaggccctaaaggcaaccctgggccccaaggtcctccg
gggagaccaggtctaccaggtccagaaggtccccggggtctccctggaattgggggcatt
aaaggagagagaggaaacccaggccaacctggacaacctggtttgtctggtttgaaagga
gatcaaggaccaccaggactccagggtaatcctggccggccaggtctcaatggaatgaaa
ggagatcctggtctccctggtgttccaggatttccaggcatgaaaggacccagcggagaa
cctggttcaactggccctgagggggatccaggacttattggccccccaggtccccctgga
ttacctggtccttcaggacagagtattgtaatcaaaggagatgctggtccaccaggggtt
ccaggccagcctggattaaaaggtctaccaggactaccaggacctcagggtttaccaggt
ccaattggccctccaggagatcctggacgcaatggactccctggctttgatggtgcagga
gggcacaaaggagacccaggtttaccaggccagccaggtatccgtggtttggatggtccc
cccgggccagatggattgcaaggtcccccaggtccccctggaacctcctctgttgcccat
ggatttctcatcacacgtcacagccagacaacagatgcaccacaatgcccacagggaact
atccaggtttatgaaggcttttctctcctgtatgtacaaggaaataaaagagctcatggt
caagacttgggaacggccggcagctgccttcgtcgcttcagtaccatgcctttcatgttc
tgcaacatcaataatgtttgcaactttgcttcaagaaatgactattcttactggctgtcc
accccagagcccatgccaatgagcatggagcccctgaagggccagagcatccagccattc
attagtcgatgtgcagtatgtgaagctccggccgtggtgattgcagttcacagtcagacc
atccagattccccgttgtcctcagggatgggattctctctggattggttattccttcatg
atgcacacaagtgcaggggcagagggctcaggtcaagccctggcctcccctggttcgtgc
ttggaagagtttcgttcagctcccttcattgagtgtcatgggcgggggacctgcaactat
tatgccaactcctacagcttttggctggcaactgtagatgtgtcagacatgttcagcaaa
cctcagtccgaaacgctgaaagcaggagacttgaggacacgtattagtcgatgtcaagtg
tgcatgaagaggacataa
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