Physeter macrocephalus (sperm whale): 102975873
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Entry
102975873 CDS
T06011
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03013
Nucleocytoplasmic transport
pcad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102975873 (UPF1)
03015 mRNA surveillance pathway
102975873 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
102975873 (UPF1)
Enzymes [BR:
pcad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102975873 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102975873 (UPF1)
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102975873 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102975873 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102975873
NCBI-ProteinID:
XP_007117002
Ensembl:
ENSPCTG00005019734
UniProt:
A0A2Y9F7V0
LinkDB
All DBs
Position
Unknown
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
CAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagactctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcactctt
cccagccagacgcagacgccccccggcggccccggaggtggcggcgctggggccccggtc
tgcgcgggcccgggcgcggcggccggacagctcgacgcgcaggtcggtggacctgagggc
atcctgcagaacggggccgtggatgacagcgtggccaagactagccagttgttggccgag
ttgaacttcgaagaagatgaggaagatacctattacacaaaggatctccccatacatgcc
tgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggttctggag
tgttataactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggctgac
tcggttgtggtgctgctatgcaggcaaccctgtgccagtcagagcagcctcaaggacatt
aactgggacagctcacagtggcagcccctgatccaggaccgttgcttcctctcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagattaccgcccagcagatc
aacaagctggaggagctctggaaggaaaatccttctgccaccttggaggaccttgagaag
ccgggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcctaccagtac
cagaacatattcggtcctctggtcaagctggaggctgactacgataagaaactgaaagag
tcacagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctatggaaagggatcggccatgtcatcaaggtccctgataattatggcgatgagatc
gctattgagcttcggagcagtgtgggtgcacctgtggaggtgactcataacttccaggtg
gacttcgtgtggaagtcaacctcattcgacaggatgcagagtgcgttgaaaacctttgct
gtggacgagacctccgtgtcgggctacatctaccacaaactgctcggccacgaggtggag
gatgtgatcatcaagtgccagctgcccaagcgcttcacggcgcaggggctccctgacctc
aaccattctcaggtttacgccgtgaagactgtgctgcagagaccactgagtctgatccag
ggcccaccgggcacaggaaagacggtgacctcagccactattgtctaccacctggctcgg
caaggcaatgggcccgtgcttgtctgtgcgccaagcaacatagccgtggatcagctgact
gagaagatccaccaaactgggctgaaagtcgtgcggctctgtgccaagagccgagaggcc
atcgactccccggtgtcgttcttggccctgcacaaccagatcaggaacatggacagcatg
ccagagctccagaagctgcagcagctgaaggatgaaaccggcgagctgtcgtctgcggac
gaaaagcggtaccgggccctgaagcgcactgccgagagggagctgctcatgaatgcagat
gtcatctgctgcacgtgtgtgggcgccggggacccgaggctcgccaagatgcagttccga
tccattttaatcgacgagagcactcaggccaccgagccagagtgcatggtccctgtggtc
cttggagccaagcagctgatcctcgtgggcgaccactgccagctgggccccgtggtgatg
tgcaagaaggcggccaaggctggcctgtcccagtcgctctttgagcgcctggtggtgctg
ggcatccgtcccatccgcctccaggtccagtatcggatgcatcctgcgctcagtgccttc
ccatccaacatcttctatgagggctctcttcagaatggtgtcactgcagcggatcgtgtg
aagaaggggtttgacttccagtggccccaaccggataaaccaatgttcttctacgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctaaacaggacggaggctgca
aatgtggagaagatcaccacgaagctgttgaaggcgggcgccaagccagaccagatcggc
atcatcacgccctatgagggccagcgctcctacctggtgcagtacatgcagttcagtggc
tccttgcacaccaagctctaccaggaggtggagatcgccagcgtggatgcgttccagggc
cgcgagaaggacttcatcatcctctcctgtgtgcgggcgaatgagcaccaaggcattgga
tttttaaacgaccccaggaggcttaatgtggccttgaccagagcacgatatggggtcatt
attgtgggcaacccaaaggccctgtccaagcagccgctctggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggaggggccgctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgaca
acagccatgtatgatgcccgggaggccatcatcccaggatcggtctatgaccggagcagc
cagggccggccctcaaacatgtacttccagacccatgaccagattggcatgatcagtgct
ggccccagccacgtggctgccatgaacattcccatccccttcaacctggtcatgccgccc
atgccgccaccggggtattttggacaagctaacgggccagccgcaggccggggcacccca
aaaggcaagaccggtcgtgggggacgccagaagaaccgctttgggcttcctgggcccagc
cagacgaacctccccaatagccaggccagccaggatgtggcgtcacagcccttctcacag
ggcgctctgacccagggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggagatgaatttaagtcacagatt
gatgtggcgctgtcgcaagactccacgtaccagggggagcgggcgtaccagcacggcgga
gtgacggggctgtcccagtattag
DBGET
integrated database retrieval system
