KEGG   Physeter macrocephalus (sperm whale): 102976275
Entry
102976275         CDS       T06011                                 
Symbol
NRDE2
Name
(RefSeq) nuclear exosome regulator NRDE2
  KO
K26109  nuclear exosome regulator NRDE2
Organism
pcad  Physeter macrocephalus (sperm whale)
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcad03019]
    102976275 (NRDE2)
Messenger RNA biogenesis [BR:pcad03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102976275 (NRDE2)
SSDB
Motif
Pfam: NRDE-2 HAT_PRP39_N TPR_14 HAT_Syf1_CNRKL1_N TPR_12
Other DBs
NCBI-GeneID: 102976275
NCBI-ProteinID: XP_007102742
Ensembl: ENSPCTG00005012097
UniProt: A0A2Y9EJ76
LinkDB
Position
11:complement(169286983..169335428)
AA seq 1165 aa
MALFPAFAGVSEAPESGSPRKELDWLSNPSFCVGTITSLSQQTEEATAFASEESLLTRSP
LKSEPSDESDTNKKPKQTSRKKKKEKKKKRKHQHHKKTKSKRGQSSSSGSESYTDSEKDR
SCGNIRGSKKESEKPNQENNATADIGRHFVWLEDIQALTGETFRTDKKPDPANWEYKSLY
RGDVARYKRKGDSCLGINPKKQCISWEGTSTEKKRSHKHVERYFTKKSVGLMSINGVAIS
SKTEPPSSESISFIPVKGAEDVVSPVTSWLNPLGIYDEATTQWLQGRGPSEQESKQPGSQ
PDRENVLLKAKVEEFNRRVWENPRDIQLWMAFVAFQDEVMRSPGLYAIEEGEQEKQKRSL
RLVLEKKLAILERAVESNPSSVDLKLAKLQLCAEFWEPSTLVKEWQKLIFLHPNNTALWQ
KYLLFCQSQFSTFSISKIQSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFALFLQQCHF
LRQAGHSEKAVSLFQALVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWR
AWMQQQERGGWVVVSPDDDDDEPEDEDQEIKDKTLPRWQIWLAAERSRDHRHWRPWRPEK
TKKQAEEDCEDPERQVLFDDIGQSLIRLSSPDLQFRLIAAFLQFLGVPSGFSPPASCLYL
AMDENSIFDNGLYDEKPLTFLSLSFSGVSCVGRTDQLGCRHWTRGHSREGEEFIRSIFHL
VMPLFSGKERSQLCFSWLRYEIAKVVWCLHTKNKKRLKSQGKNCKKLAKNLLKEPDNRNN
FGLWKQYAHLEWLLGNTEDARRVFDTALSIAGSRELKDHELCELGLLYAELEVELLPDVR
GAASARAIHVLTRLTENGAYGPYTGQVLAVHILKARKAYEHALQDCLGESCVSDPAPADS
FSRLISLVKCFMLFQYLTIGIDAAVRIYEQVFAKHKISVSAEGPGLEGSASPQNLSGVLE
AVTLMHTSLLRFHMKVAVYPLAPLREALSEALKLYPGNQVLWRSYVQIQNKSHSASKTRR
FFDAITRSAKPLEPWLFAIEAEKMRKRLVETVQRVDGREVYATIPETGLTHRIRALFENA
MRSDYGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQE
ILDLMTEKELRVRLPLEELELLLED
NT seq 3498 nt   +upstreamnt  +downstreamnt
atggcgctgttccccgcctttgcgggtgttagtgaggcgcccgagagcgggagccccagg
aaagaattagactggctgagcaacccaagcttttgtgttggaaccataacatctctgagc
caacaaactgaagaggccacagcctttgcttctgaagagtcgctactgaccaggagtcct
ctgaagtcagagccttcagatgaaagtgacactaacaaaaagcccaaacaaacaagcaga
aaaaagaagaaagagaaaaagaagaaaaggaagcatcagcaccacaagaaaaccaagagt
aaacgtgggcagtccagtagcagtggatctgagtcatatactgattctgaaaaggacaga
tcttgcggaaacatcagaggcagtaaaaaggaatcagagaaaccgaatcaagaaaataat
gccactgctgatattggacgtcactttgtttggcttgaggacattcaggctctgacggga
gaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctttac
cgaggagatgtagcaagatacaagaggaaaggagactcctgccttggcattaaccctaag
aagcagtgtatatcttgggaggggacttccacagaaaagaagcggtcacacaagcatgtc
gagcgctactttacaaagaagagtgtgggattaatgagcattaacggagttgccattagc
agtaaaactgaacctccctcatcggagtcgatctcatttatcccagtgaagggtgcagag
gatgtggtttcccctgttacaagctggttgaaccctctggggatttatgatgaagccacc
acgcagtggttacaaggccggggtccttcagagcaggaatccaagcagcccggttcacag
cccgacagagagaacgtgcttctcaaggccaaggtggaggagtttaacaggagggtttgg
gagaatcctcgagatattcagctgtggatggcatttgttgcttttcaggacgaggtcatg
agaagtccgggcctgtacgccatcgaggaaggagagcaggaaaagcagaagcggtccctg
aggctggttctggagaagaagctggccattctggaacgggccgtggaaagcaacccgagc
agcgtggatctgaaacttgccaagctgcagctctgcgccgagttctgggagccctccact
ctggtcaaagagtggcagaaactgatatttttacatcccaacaatacagccctttggcag
aaataccttttattttgccagagccagtttagcaccttttccatatcaaaaattcagagt
ctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttgtctcac
cctgagctgcctggcactgaggaggccatgtttgccctctttcttcagcagtgccacttt
ctgcggcaggctggtcactccgagaaggccgtctctctgttccaggccctggttgacttc
accttcttcaaacccgacagtgtgaaagacctgcctaccaaaggacaggtcgaattcttt
gagcccttttgggacagtggagagcccagggccggggagaagggcgcccgaggctggaga
gcgtggatgcagcagcaggagcggggcggctgggtggtcgtcagcccagatgatgacgat
gatgaaccagaagacgaggaccaggaaattaaagataagactctgcccaggtggcagatc
tggcttgctgctgagcggtcccgagaccacagacactggcggccgtggcgccctgagaag
accaagaagcaggcggaggaagactgtgaggacccagagaggcaggtgttgtttgatgat
attggacagtctctgatccgactttccagcccggatcttcagtttcggctgattgcagcc
tttctgcagttcttgggtgtgccttccggcttcagccctccggcctcctgcctctatctg
gccatggatgagaacagcatctttgacaatggactttatgatgaaaagcccttgactttt
ctcagcctttcattttccggcgtcagctgtgtcggacgcacggaccagctgggttgccgg
cactggaccaggggtcacagtcgagagggcgaggagttcatccgcagcatcttccacctc
gtgatgcctttgttttcaggcaaggagaggtctcagctctgcttctcctggttacggtac
gagattgcaaaggtcgtttggtgtctgcacactaaaaacaagaagagattaaaatcacaa
ggaaagaactgcaaaaaactagccaagaatctccttaaggagccagacaaccgcaacaac
tttggcctctggaagcagtatgcacatctggagtggctgctcggcaacacagaggacgcc
agaagagttttcgatacagcgctcagcatagcagggagcagagaactgaaggaccatgag
ctgtgtgagctcggtctcctctacgccgagctggaggtggagctgttgccggacgtgaga
ggggccgcctcagcccgagccattcatgtattgaccagactgaccgagaacggggcctac
gggccctacaccgggcaagtcttggccgttcacattttgaaagctcggaaggcttatgaa
cacgcgctgcaggactgtttgggggagagctgtgtctccgatccagctcccgccgattcc
tttagccgcctgattagcctggttaaatgctttatgctcttccagtatttgaccataggg
atcgacgctgctgtgcggatatatgagcaggtatttgcgaaacacaagatctctgtttcc
gcagagggccctggcctggagggcagtgccagcccccagaacctgagcggtgtcctcgag
gccgtcaccctgatgcacacgagcctgctcagattccacatgaaagtcgccgtctaccct
ctggcgcctctgcgagaggctctctcggaggctttaaagttgtatccgggcaaccaggtt
ctttggaggtcgtatgtacagattcagaataagtcccacagtgccagtaagaccagaaga
ttcttcgatgcgatcaccaggtctgccaaacccttggagccgtggttgtttgcaattgaa
gctgagaaaatgaggaaaagactagtggaaacggtgcagagggtagatggtagagaggtc
tacgccaccattcctgagaccggcctgacgcatcggatcagagccctatttgaaaatgcg
atgcggagtgactacggcagccagtgccccttactgtggaggatgtacttgaattttttg
gtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcacttcagaattgt
ccttgggcaaaggtgctgtacctggatgccgtggagtacttccccgatgagatgcaggag
atcctggacctgatgacggagaaggagctccgggtgcgcctgccgctggaggagctggag
cttctgctcgaggactag

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