Physeter macrocephalus (sperm whale): 102977936
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Entry
102977936 CDS
T06011
Symbol
YBX3
Name
(RefSeq) Y-box-binding protein 3 isoform X1
KO
K06099
cold shock domain protein A
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
102977936 (YBX3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcad03000
]
102977936 (YBX3)
03041 Spliceosome [BR:
pcad03041
]
102977936 (YBX3)
Transcription factors [BR:
pcad03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, DbpA-like
102977936 (YBX3)
Spliceosome [BR:
pcad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102977936 (YBX3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSD
OB_RNB
Herpes_LMP1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-GeneID:
102977936
NCBI-ProteinID:
XP_023984863
UniProt:
A0A2Y9T3G9
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All DBs
Position
6:complement(60235778..60260717)
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AA seq
370 aa
AA seq
DB search
MSEAGEATTTTTTTLPQAPAEAAAAAPQDPAPKSPAGGGGAPQAPAPAALVAGNPGGDAA
PAAPGTAAPASSAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA
IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYY
GRRRGPPRNCAGEEEEGSGSEGFGASAADGQLAGALSQRRRPQYRPQYRPQYPRRFPPYH
VGQTSDRRSRVFPHPNGTQAGEIGEMKDGVPEGAQLQGPVHRNPTYRARYRRGPPRPRPA
PAVGEAEDKENQQAANGPNQPPARRGYRRPYNYRRRPRPPNAPAQDGKETKAGEAPSENP
APAPEQSSVE
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggcgggcgaggccaccaccaccactactaccaccctcccgcaggctccggcg
gaggcggccgccgcggccccccaggaccccgcgcccaagagcccggcgggcggcggcggc
gcgccccaggccccggcgcccgccgccctggtcgcaggcaaccccggcggggacgcggcc
cccgcggccccgggcaccgcggcccccgcctcttcggccgccgcgggcagtgaagacgcg
gagaagaaagttctcgccaccaaagtccttggcactgtcaaatggttcaacgtcagaaat
ggatatggatttataaatcgaaatgataccaaagaagatgtattcgtacatcagactgcc
atcaagaagaataacccacggaaatatctgcgcagtgtaggagatggagaaactgtggag
tttgatgtggttgaaggagagaagggtgcggaagcagccaacgtgactggcccggatggc
gttcctgtggaagggagccgctatgctgctgatcggcgccgctacagacgcggctactac
ggccggcgccgtggaccgccccgcaactgcgctggggaggaggaggaagggagcggcagc
gaaggatttggcgcctccgccgctgacgggcagctcgcgggggccctgagtcagcggcgc
cgcccccagtaccgcccccagtaccgcccccagtacccgcggcgcttcccgccttaccac
gtgggacagacctctgaccgccgctcccgggtctttccccatcccaacggaacgcaggcg
ggtgagattggagagatgaaggatggagtcccagagggagcacaacttcagggaccagtt
catcgaaatccgacttaccgcgcaaggtaccgtaggggcccacctcgcccacgacctgcc
ccagcggttggagaggctgaagataaagagaatcaacaagcggccaatggtccaaaccag
ccacctgctcgccgtggataccggcgcccctataactatcggcgtcgcccccgtcctcct
aatgctcctgcgcaagatggcaaagagaccaaggcaggtgaagcaccctctgagaaccct
gctccagcccccgagcagagcagtgtcgagtaa
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