Physeter macrocephalus (sperm whale): 102978798 Help Entry 102978798         CDS       T06011                                  Symbol COL4A1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism pcad  Physeter macrocephalus (sperm whale) Pathway pcad04151   PI3K-Akt signaling pathway pcad04382   Cornified envelope formation pcad04510   Focal adhesion pcad04512   ECM-receptor interaction pcad04518   Integrin signaling pcad04820   Cytoskeleton in muscle cells pcad04926   Relaxin signaling pathway pcad04933   AGE-RAGE signaling pathway in diabetic complications pcad04974   Protein digestion and absorption pcad05146   Amoebiasis pcad05165   Human papillomavirus infection pcad05200   Pathways in cancer pcad05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:pcad00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     102978798 (COL4A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102978798 (COL4A1)    04518 Integrin signaling     102978798 (COL4A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     102978798 (COL4A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     102978798 (COL4A1)  09150 Organismal Systems   09152 Endocrine system    04926 Relaxin signaling pathway     102978798 (COL4A1)   09154 Digestive system    04974 Protein digestion and absorption     102978798 (COL4A1)   09158 Development and regeneration    04382 Cornified envelope formation     102978798 (COL4A1)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     102978798 (COL4A1)   09162 Cancer: specific types    05222 Small cell lung cancer     102978798 (COL4A1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     102978798 (COL4A1)   09174 Infectious disease: parasitic    05146 Amoebiasis     102978798 (COL4A1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     102978798 (COL4A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:pcad04147]     102978798 (COL4A1)    00536 Glycosaminoglycan binding proteins [BR:pcad00536]     102978798 (COL4A1) Exosome [BR:pcad04147]  Exosomal proteins   Exosomal proteins of other cancer cells    102978798 (COL4A1) Glycosaminoglycan binding proteins [BR:pcad00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102978798 (COL4A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  102978798 NCBI-ProteinID:  XP_023978941 Ensembl:  ENSPCTG00005018947 UniProt:  A0A2Y9SJX4 LinkDB All DBs Position 13:complement(79089312..79243216) Genome browser AA seq 1668 aa AA seqDB search MGPRLGVWLLLPAALLLHEESSRAAAKGVCAGSGCGKCDCHGVKGQKGERGLPGLQGVIG FPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPG IPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHIPGTLLKGERGFSGPP GAPGLPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPG VPGQAQVREKGEYAAKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGEKGEKGSL GFPGDSGYPGLPGREGLKGDKGEAGPPGPPGIVIGTGPLGEKGERGYPGAPGLKGEPGPK GFPGIQGLPGPPGFPIPGLIGAPGFPGERGEKGDQGLPGVSLPGPGGRDGLPGPLGPPGP PGQPGHTNGIVECQPGPPGDQGPPGSAGQPGLTGEVGEKGQKGESCLICDSTGLRGPPGP QGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGVPGLMGQPGAKGEPGEIYFETRLKG DKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDVG PPGPPGFGPIGPIGDKGQMGFPGNPGSPGLPGPKGEEGKVTPLPGPPGVSGLPGSPGFQG PQGDRGFPGTPGRPGLSGEKGSVGQPGIGFPGPPGPKGVDGLPGDTGPPGNPGRQGFNGL PGNPGLPGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGNIGGPGIPGEHGAIGPAGLQGIR GDPGPPGLQGPKGASGVPGIGPPGALGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPGP KGDKGPQGLPGLTGQSGLPGIPGQQGTPGQPGFPGPKGEMGIMGTPGQPGSPGPAGVPGL PGEKGDHGFPGTSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGP SGDKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGI PGEKGVPGLPGLQGIPGSPGEKGAKGEKGQEGLPGIGIPGRPGEKGDQGVAGFPGSPGEK GEKGSSGIPGMPGSPGPKGSPGSAGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKP GTTGPAGQKGEPGSDGFPGSAGEKGEPGLPGRGFPGFPGAKGEKGSKGDVGFPGLAGSPG IPGSKGEQGFMGPPGPQGQPGLPGTPGHAVEGRKGDRGPQGQPGLPGLPGPMGPPGLPGL DGLKGDKGNPGWPGTPGAPGPKGDPGFQGMPGVGGSPGATGAKGDMGPPGVPGFQGQKGL PGLQGVKGDQGDQGFPGTKGLPGPPGPPGPYDIIKGEPGLPGPEGPAGLKGLQGPPGPKG QQGVTGSVGLPGPPGIPGFDGAPGQKGEAGPFGPPGPRGFPGPPGPDGLPGSMGPPGTPS VDHGFLVTRHSQTTDEPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGEGIRPFISRCTVCEAPAMVMAVH SQTIQIPQCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT CNYYANAYSFWLATIDRSQMFKKPTPSTLKAGELRTHVSRCQVCMRRT NT seq 5007 nt NT seq  +upstreamnt  +downstreamnt atggggccccggctcggcgtctggctgctgctgcccgccgccctcctgctccacgaggag agcagccgggccgccgcgaagggtgtatgtgctggctctggctgcgggaaatgcgactgc catggcgtaaagggacaaaagggagaaagaggtctcccagggttgcaaggtgtcatcggc ttcccgggaatgcaaggacctgaggggccgcagggacccccgggacagaagggggacacc ggagaaccaggactgccaggaactaaagggacgaggggacccccaggagcatctggttac cctggaaacccaggacttcctggtattcctggccaagacggtcctccgggtcccccaggt atcccaggatgcaacgggacgaagggtgagagagggcctctggggcctccgggtttgcct ggattcgctggaaatcccggaccgccagggttaccgggaatgaagggggatccaggtgaa atacttggccatataccagggaccctgttgaaaggtgaaagaggattttctggacccccc ggagcacctggtttgccaggactgccagggctgcaaggtcctgttggccccccgggattc actggaccaccaggtcccccaggccctcctggccctccaggtgaaaaggggcaaatgggc ttgagttttcaagggccaaaaggtgacaagggtgatcaaggggtcagcgggccccccgga gtaccaggacaagctcaagttcgagagaaaggagagtatgctgcaaaaggagagaagggc caaaaaggtgaacctggatttcaggggatgccaggggttggagagaaaggtgaacccgga aaaccaggaccccgaggaaaaccaggaaaagacggtgaaaaaggagaaaaagggagtcta gggtttccgggggattcgggatacccaggactcccaggccgagagggtttaaagggagac aaaggtgaagcaggccctcctggccctcctggaattgttatcggcacagggcccttggga gagaagggagagcgggggtacccaggggctccagggttgaaaggggagccgggccccaaa ggtttcccaggaatacaaggcctgccaggccctccaggcttcccgataccagggctgatt ggtgcccccggcttccccggtgaaagaggagagaaaggtgaccagggcttgccaggcgtg tccttgcccggaccaggtggaagggatgggctaccaggcccccttgggccccccggcccc cctgggcagccaggccacacaaatggaattgtggaatgccagcccgggccgccaggtgac cagggtcctcccggaagtgcggggcagccggggttgacaggcgaagttggagaaaaaggc caaaaaggagaaagttgcctcatctgtgactcaacaggacttcgtgggcccccagggcca cagggaccccccggagaaataggtttcccaggacagccaggggccaagggcgacagaggt ttacccggcagggatggtctcgaaggattgcctggaccacaaggtgtgccagggctgatg ggccagccaggagccaagggcgagcctggcgagatttacttcgaaactcgactcaagggc gacaaaggagacccaggtttcccaggccagcccgggatgccaggcagagcaggctctccc ggaagagacggccatccgggtctgcccggccccaaaggctccccgggttcagtaggatta aaaggagaacgtggccccccgggaggagttggattccccggcagccgcggtgacgtcggc cctcctgggcctccagggtttggccctattggccccattggtgacaaaggacagatgggc tttccgggaaaccccgggtccccaggcctgccaggtcccaagggtgaagaaggaaaggtc acgcccttacccggcccccctggagtctcaggcctgccggggtcccccggcttccaaggg cctcaaggtgaccgaggttttcctggaaccccgggaaggccgggcctctctggagagaag ggttcagtcggccagcctgggattggctttccagggcctcccggccccaaaggtgttgac ggtttacctggagacactggacctcctggaaatcccggtcgccaaggttttaatggctta cccggcaacccaggtctgcctggccaaaagggagagcctggagttggtctgccgggactc aaaggtctgccaggactccctggcatccccggcacccctggagagaagggaaacatcggg ggaccaggcattcccggagagcacggcgccatcggccctgcaggccttcagggaatcaga ggtgacccgggacctcctggattgcaaggtcccaaaggagcttctggagtccccggaata ggccctcctggagctttgggaccccctggaggacagggacccccagggtcatcaggcccc cctggagtgaaaggagagaagggcttccccggattcccaggcctggacatgccgggcccc aaaggagacaaagggccgcaggggctccccggcctgacgggacaatcggggctgcctggt atccctggacagcagggcacacctggacagcccgggttcccaggtcccaagggagagatg ggcatcatggggacccccgggcagcccggctcgccaggaccggcgggtgtgccaggattg ccgggtgaaaaaggggaccacggcttcccgggcacctcgggacccaggggagaccctggc ttcaagggagataaaggagatgtgggtcttcctggcaagccgggctccatggataaagtg gacatgggcagcatgaagggccagaagggtgaccaaggagaaaaaggacaaatcggccca agtggtgataaaggatcccggggagatcctggaaccccaggagtgcctggaaaggacggt caggcaggacaacctgggcagccaggacctaaaggtgatccgggcataagtgggacccca ggtgctccgggacttcctggacccaaaggatcggttggtggaatgggcctgccaggaata cctggagaaaaaggtgtgcctggcctccctggcctgcagggcatccctggctcacctgga gaaaagggagcaaaaggagagaaagggcaggagggtctgcctggcattggaattccagga cggcccggggaaaagggagaccaaggggtagcaggttttccaggaagccctggagagaag ggagagaaaggaagcagtgggatcccagggatgcccgggtctccaggccccaaaggctca ccagggagtgctggctatccaggaagccctgggttgcctggagaaaaaggtgacaaaggc ctcccgggattggatggtatccctggcatcaaaggagaagcaggtcttcctgggaagcct ggtaccacaggcccggccggccagaaaggggagcccggcagtgatggattcccggggtca gcaggagagaagggtgaaccaggtctacccggaagaggattcccagggtttccaggggcc aaaggagagaaaggttcaaagggcgacgtgggtttcccaggcttagctgggagcccagga attcctggatccaaaggagaacaaggattcatgggtcctccggggccacagggacagccg ggattgccaggcaccccgggccacgcagtggaggggcgcaaaggagaccggggcccacag ggacagcctggcctgccagggcttccgggacccatggggcctccagggctccctgggctt gatgggctgaaaggtgacaagggaaacccaggctggccgggcactcctggggctccaggg cccaagggagacccaggattccagggcatgccgggggtcggtggctctccaggagctaca ggtgctaagggtgatatgggacctccaggagttccagggtttcaagggcagaaaggcctc cctggccttcagggagttaaaggtgaccaaggagaccaaggtttccctggaactaaaggt cttcctggccctccgggccccccgggtccatacgacatcatcaaaggggagccagggctc cctggtcctgagggccccgcaggtctgaaagggcttcagggacctccaggccccaaagga caacaaggtgtgacaggatctgtgggcttacctgggccaccaggtattcccgggtttgat ggggcccctggccagaaaggagaggcaggaccctttggacctcctggtccaagaggcttc ccgggtccacccggccctgatgggttgccgggatccatgggtcccccaggcaccccatct gttgatcacggcttcctcgtgaccaggcacagtcagacaacagacgagccccagtgtcct cccgggaccaaaatcctctaccatgggtactctctgctctacgtacaaggcaatgagcgg gcacacggccaggacttgggcacggcgggcagctgtctgcgcaagttcagcacgatgccc ttcctcttctgtaacatcaacaacgtctgcaacttcgcctcccgaaatgattactcgtac tggctgtccaccccggagcctatgcccatgtccatggctcccatcaccggggagggcatc aggcccttcatcagcaggtgtactgtgtgtgaggccccggccatggtcatggctgtgcac agccaaaccatccagatcccgcagtgccccagcggctggtcctcgctatggattggctac tcctttgtgatgcacaccagcgctggagccgaaggttctggccaagccctggcctctcct gggtcctgtctggaagagttcagaagcgcccccttcatcgagtgccacggccgcgggact tgcaattactatgcaaacgcttacagcttttggcttgccacgatagacagaagccagatg ttcaagaagcccacgccgtccaccctgaaggctggagagctgcgcacccacgtcagtcgc tgtcaagtgtgcatgcggagaacataa

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