Physeter macrocephalus (sperm whale): 102978859
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Entry
102978859 CDS
T06011
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102978859 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcad04147
]
102978859 (COL18A1)
00535 Proteoglycans [BR:
pcad00535
]
102978859 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pcad00536
]
102978859 (COL18A1)
Exosome [BR:
pcad04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102978859 (COL18A1)
Proteoglycans [BR:
pcad00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102978859 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pcad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102978859 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102978859
NCBI-ProteinID:
XP_054942445
Ensembl:
ENSPCTG00005018061
UniProt:
A0A9W2WTY0
LinkDB
All DBs
Position
8:14657588..14705277
Genome browser
AA seq
1545 aa
AA seq
DB search
MNGELAAGPGLGGGAGXAPPLDSSGRRXLRAAHSPMAPDPSGRRRHRGHRGLLLLLACCL
APARADLMSWLWPANAAGSTAAPASKPPDSSPVRPTEDTTTHVAPQDDPSQRWKALASPE
PPLERPEVGQGQAPAVPPAASTASPDTKEENIAGVGAKILNVALGIRSFVQLWDDTTPTK
SSARAGTPGPESPTHPLTTPGPSSGPQDDGTTLWLSTGAPSSPDTQRTEASTLPAPTQPP
PSTDRPRALLGEPAVPPPSPESQVVEVGLQPLLGEPLPRQVALVHDPDVGPAYEFGADVG
GDGWAARSLLPSTFFRHFSVLVRVRPASARAGVLFAVTDAAQAVVLVGVKLAAARGAWQQ
VQLLYTEPGAARTHTAASFALPALDGRWTRLALTVDGAHAALFVDCKEVQRQPLVRPPRG
LQVEPDARLFVAQAGRADPDKFQGLISDLRLREDPQVSPLHCLDADEEDDDDRASGDLGS
GLAETWERVGGELGAPLGPRLPGAPPVASPPLAGAGHQEDFRTEEIEEETTVSSLGAQTL
PSLSTVATWDGSEWSPGGGLKEQGLKGQKGEPGAQGPPGPVGPQGPAGPAVQTPDAQPVP
GPQGPPGPPGKDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQG
PPGPPGPSLRRDRLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNS
SDVPGPAGLPGVPGRDGPPGLPGTPGPPGPPGKDGQPGQTGQKGSLGEAGAPGPKGSKGD
PGPIGTPGERGLAGRPGPAGPPGPPGPPGPPGPGLAAGFDDMEGSGAPFWSTARGASGPQ
GPPGPPGVKGDPGVMGPPGTKGEAGADGAPGFPGLPGREGAAGLQGPKGEKGPQGEKGDP
GKDGVGQPGLPGPPGPPGPVVYVSEQDRALASVPGPEGRAGLAGLPGPAGPKGDLGSRGQ
QGPPGPKGEKGEPGMVYSPDGRALTSSHKGAKGDPGFRGPPGPYGRPGHKGEIGFPGRPG
RPGMNGLKGEKGEPGDASVGFGARGPPGPPGPQGPPGPPGTPVYDSNAFVESGRPGPPGL
PGHQGPSGPKGDKGEVGPPGLPGQFPLDLLHLGAEMKGEKGDQGAAGQKGERGEPGGGGF
FSSSVPGPPGPPGYPGIPGPKGESIQGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGP
PSFPGPYRQTISVPGPPGPPGPPGPPGSMGTSSGVRVWATYQTLLDQVPEVPEGWLIYVA
DREELYVRVRNGFRKVLLEARTPLPRGTDNEVAALQPPVVQLHEGNPYPRREPPHPTARS
WRADGILASPPRLTHAQPYPGAPHPGGYAHLRPATPTASPAHTHHDFQPVLHLVALNSPQ
SGGLRGIRGADFQCFQQARAAGLAGTFRAFLSSRLQDLYSIVRRADRASLPIVNLRDEVL
SPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPAWPQKSLWHGSDPSGRRLTESYCETWR
TEARAATGQASSLLAGRLLEQKAAGCYNAFIVLCIENSFMTSSSK
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggagctggctgcgggcccagggctgggaggcggggcgggcngggccccgcct
ctggacagcagcggccgccgcnagctccgtgctgctcacagcccgatggctccggacccc
agcggccgccgccgccaccgcggccaccgcggcctgctgctgctacttgcctgctgcctc
gcgcccgcccgggctgacctgatgtcctggctgtggcccgctaacgctgccgggtccacg
gccgcaccggcctccaagcccccggacagctcacctgtgcggcccacggaggacaccacc
acgcacgtggccccccaggatgaccccagccagcggtggaaagcccttgccagccccgag
ccgcctctggagaggccggaggtgggccagggccaggcccccgctgtccccccggcggcc
tccaccgcgagcccagacacaaaggaggagaacatcgccggcgtcggagccaagatcctg
aacgtggctctgggcatccggagcttcgtccagctgtgggacgacaccacccccaccaag
agctccgccagggcggggacgccaggccccgagagccccacgcaccccctcaccacccct
ggaccctccagcggcccccaggacgacgggaccactctctggctgagcaccggggccccg
agctctccggacacccagaggaccgaggccagcaccctgccagcgcccacccagccgccg
ccctccacggacaggccccgggccctgctcggggagcctgcggtaccaccgccatcccca
gagagccaggtcgtggaggtggggctccagccgctgctcggggagcccctgccgcggcag
gtggccctggtgcacgaccccgacgtggggcccgcctacgagttcggcgccgacgtgggc
ggtgacggctgggcggcccggagcctcctgcccagcacgttcttccgccacttctccgtg
ctggtgcgcgtgcggccggcctcggcgcgcgcgggcgtgctcttcgcggtcacggacgcg
gcgcaggcggtggtcttggtgggcgtgaagctggcggcggcgcgcggggcgtggcagcag
gtgcagctgctctacaccgagcctggtgccgcccgcacacacacggccgccagcttcgcg
ctgcccgcgctggacggtcgctggacgcgcctggccctcaccgtggacggcgcgcatgcc
gcgctctttgtggactgcaaggaggtccagcgccagcccctggtgcgccccccacgcggc
ctgcaggtggagcccgacgcccgcctcttcgtggcccaggccggccgagcagaccctgac
aagttccagggcctgatctcggatctgaggctgcgtgaggacccccaggtgagccccctg
cattgcctggatgcggacgaggaggacgatgacgatagggcgtcaggagacttgggcagc
gggcttgcggagacctgggagcgtgttgggggggagttgggcgcacccctggggcccagg
ctccccggggctcctccggtcgcttctccacccttggctggagcgggccaccaggaagac
ttcaggaccgaggagatcgaggaggagaccacggtgtcttcgttaggagcgcagaccctc
cccagcttgagcacagtcgccacgtgggacgggagcgagtggagccctgggggcggcctg
aaagagcaaggcctgaaggggcagaaaggagaaccgggcgctcagggcccccccggcccg
gtcggtccccagggtcccgcaggcccggccgtgcagacccccgatgcacagcccgttccc
gggccgcagggacccccggggcccccggggaaggatggcgagcccggtgatcctggcgaa
gatgggaaacctggggacaccgggccgcagggcttcccaggaaccccgggagacgtgggc
cccaagggcgagaagggggatcctggggtcgggccgaggggacccccaggaccccaaggg
cctccggggccacccggaccctccttgagacgtgacaggctgaccttcatcgacatggag
gggtccgggtttggtggcgacctggagagcctccgcggccctcgaggcttccccggcccc
cctgggccccctggcgtcccaggcctgcccggagagccaggccgcttcgggatgaacagc
tcggacgtccccggacccgcaggccttcccggagtgcctgggcgggatgggccccccggg
cttcctgggaccccaggacccccaggtccgccaggaaaagatgggcaaccgggacagacc
ggccagaagggcagccttggcgaggcgggcgccccaggacccaagggaagcaagggagac
cccggccccatcggcacgcccggggagcgcggcctggcaggacgccccggaccggcagga
ccaccaggtcccccgggcccccccgggcccccaggcccaggactcgctgcggggtttgac
gacatggaaggctccggggcccccttctggtcgacggcccgaggtgccagtgggccgcag
ggaccgcctggccctcccggagtcaagggggatcctggagtcatggggccaccagggacc
aagggagaggccggagccgacggagctcctgggttccccggccttcccggcagggagggc
gcagccggactccagggaccaaaaggagaaaaagggccccagggagagaaaggcgaccca
gggaaggacggagtggggcagccaggcctcccgggaccccccggacccccagggcctgtc
gtctacgtgtcggagcaggacagagcactggcgagcgtgccgggccccgagggccgggcg
gggctcgcgggcctccccgggccagccgggccgaagggagacctgggctccagaggccag
cagggccccccgggacccaagggcgagaagggtgagccgggcatggtctacagccctgac
ggcagagcgctgacctcctcccataaaggagccaagggtgaccctggcttccgaggaccc
ccgggtccctacgggcggcccgggcacaagggagagattggcttccctggacggccgggg
cgccccgggatgaacggactgaaaggggagaagggggagccgggagatgccagcgtggga
ttcggcgccaggggtccgcccggcccacctgggccccaagggcccccgggccctcccggg
actcctgtctatgacagcaacgcgtttgtggagtctggccgccctggacccccgggattg
ccagggcaccaggggccttctggaccgaagggtgacaaaggagaagtgggcccacccggg
ctaccagggcagttcccgttggacctcctccacttgggcgctgagatgaagggggagaag
ggcgaccaaggggccgctgggcagaaaggagaaaggggcgagcccgggggcggcgggttc
ttcagctccagcgtgcctggcccccccggcccgccaggctaccctgggattccggggccc
aagggagagagcatccagggccagcctggccctcctggacctcagggaccccctggcatc
ggctacgagggacgccaggggcctcctgggccccccggacctccagggcccccgggaccg
ccatcctttcctggcccttacaggcagactatcagtgttcctggccccccaggcccacct
gggcccccaggaccgcccggatccatgggcacctcctcaggggtgagggtctgggccacg
taccagaccctgctggaccaggtgcccgaagtgccggagggctggctcatctatgtggcc
gacagggaggagctgtacgtccgggtccggaacgggttccggaaggttctgctggaggcc
cgcacaccccttccccgcgggacggacaacgaggtggccgctttgcagccccccgtggtg
cagctgcacgagggtaacccgtacccccgccgggagcccccgcaccccacagcgcggtcc
tggcgggccgacggcatcctggccagtcctccgcgcttgacacacgcccagccctacccc
ggggccccgcaccccggcggctacgcgcacctccgaccggcaacccccacggcctcaccc
gcccacactcaccacgatttccagccggtgctccacctggtcgcgctcaacagcccgcag
tcgggaggcctgcgcggcatccgcggcgccgacttccagtgcttccagcaggcgcgtgcc
gcggggctggcgggcaccttccgcgccttcctgtcctcgcggctgcaggacctctacagc
atcgtgcgccgcgcagaccgcgcctccctgcccatcgtcaacctcagagatgaggtgctg
tctcccagctgggaggccttgttctcgggctccgagggccagctgaagcccggcgcccgc
atcttctctttcgatggcagagacgtcctacagcaccccgcctggccccagaagagcttg
tggcacggctcggaccccagcgggcgccggctgacggagagctactgcgagacgtggcgg
accgaggccagggcggccacgggccaggcctcctcgctgctggcgggccggctgctggag
cagaaagctgcgggctgctacaacgccttcatcgtcctctgcatcgagaacagcttcatg
acctcctcctccaagtag
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