Physeter macrocephalus (sperm whale): 102979221
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Entry
102979221 CDS
T06011
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102979221 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcad03041
]
102979221 (PRPF4)
Spliceosome [BR:
pcad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
102979221 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
PRP4
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
102979221
NCBI-ProteinID:
XP_007109555
Ensembl:
ENSPCTG00005010458
UniProt:
A0A2Y9EVL1
LinkDB
All DBs
Position
9:complement(11923204..11939312)
Genome browser
AA seq
523 aa
AA seq
DB search
MASSRASSAVQATKTKASDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAG
IEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPI
TLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARL
WIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHF
SPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASC
AADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL
HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNG
YHVATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTH
PGWSPLKTLAGHEGKVMGLDISSNGQLIATCSYDRTFKLWMAE
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcacgagcctcctccgcggtacaggcaaccaaaactaaggcatctgatgac
ttagtcgctcctgttgtgaagaaaccacacatctattatggaagtttggaagagaaggag
agggagcgcctggccaaaggagaatctgggattttgggaaaagaaggacttaaagcagga
attgaagcagggaacattaacatcacctctggagaagtgtttgaaattgaagagcacatc
agtgagcgacaggccgaagtgttagctgagtttgagaggaggaagcgagcccggcaaatc
aatgtttccacagatgactcagaggtcaaggcttgccttagggccttgggggaacccatc
acactttttggagagggtcctgctgaaagaagagaaaggttaagaaatatcctttcagtg
gtcggtactgatgccttaaaaaagaccaaaaaagatgatgagaaatcaaagaagtccaaa
gaagagtatcagcaaacctggtaccatgaaggaccaaacagcctgaaggttgctagactg
tggattgctaattattcactgcctagggcaatgaaacgcttggaagaggcccgtcttcat
aaagagattcctgagacaacgagaacctcccagatgcaagagctgcacaaatctctccgg
tctttgaataatttctgcagtcagattggggatgatcggcctatctcctactgtcacttt
agtcccaattccaaaatgctggccacagcttgttggagtgggctttgcaagctctggtct
gttcctgattgcaacctcctccatactcttcgaggccataacacaaacgtgggagcaatt
gtattccatccaaaatccactgtctccttggaccaaaaagatgtcaatctggcctcttgt
gctgctgatggttctgtgaagctttggagccttgacagtgatgaaccagtggcagatatt
gaaggccatacagtgcgtgtggcccgtgtaatgtggcatccatcaggacgtttcttaggt
accacctgctatgaccgttcatggcgcttatgggatttggaggctcaagaggaaatcctg
catcaggaaggccacagcatgggtgtgtatgacattgccttccatcaagatggctctttg
gctggcactgggggactggatgcatttggtcgagtttgggacctgcgtacaggacgttgc
atcatgttcctagaaggtcacctgaaggaaatctatggaataaatttctcccccaatggc
taccacgttgcaactggcagtggtgacaacacctgcaaagtgtgggaccttcgacagcgg
cgttgtgtctataccattcctgcccaccagaacttagtgactggtgtcaagtttgagcct
atccatgggaatttcttgcttactggtgcctatgataacacagccaagatctggacccac
ccaggctggtcgccactgaagactctggctggccacgaaggcaaagtgatgggcctagac
atttcttcgaacgggcagcttatagccacttgctcatatgacaggaccttcaagctctgg
atggctgaatag
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