Physeter macrocephalus (sperm whale): 102979498
Help
Entry
102979498 CDS
T06011
Symbol
TGFBRAP1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 isoform X4
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102979498 (TGFBRAP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcad04131
]
102979498 (TGFBRAP1)
Membrane trafficking [BR:
pcad04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102979498 (TGFBRAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
zf-Vps39_C
CNH
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
102979498
NCBI-ProteinID:
XP_023972366
Ensembl:
ENSPCTG00005014059
UniProt:
A0A2Y9S179
LinkDB
All DBs
Position
12:complement(22747320..22809482)
Genome browser
AA seq
859 aa
AA seq
DB search
MMSTKAFTLVPAVEREQLMGDGERVSLECVECCGRNLYLGTSDCFVYHFLLEEKTVPGGS
ATFTATKQLHRHLGFKKPVNELRAASALYRLLALCDGSITLVHMLSLEPVPSGARIKGAT
AFALNENPVSGDPFCVEVCIISVKRRTIQVFLVYEDRVQIVRELSTPEQPLAVAVDGHFL
CLALTTQYIILNYSTGVAQDLFPFCSEEKRPIVKRIGRQEFLLAGPGGLGMFATVAGVSQ
RAPVHWSENVVGAAVCFPYVIALDSEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVA
TSKGVYVLVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQ
FAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEFADLNQLTQGDQEK
VARCKHFLMSYLNEVRSTEVANGYKEDVDTALLKLYTEADHDSLLDLLVTENFCLLADSA
AWLEKHKKYFALGLLYHYNHQDAAAVQLWVRIVNGDIHDCTRSDLYEYVVDFLTDSLDPD
LVWQYADWVLQKNPEVGVQVFTKRPVDEQESRFNPDDIISCLKKYPQALVKYLEHLVMDR
RLQKEEYHTHLAVLYLDEVLQQRPSASGKDADVTETQAKLRRLLQKSDLYRVHFLLDRTR
GAGLPVESAILHGKLEQHEEALRILVHELADFPAAEDYCLWCSEGRAPPYRQRLFHLLLA
VYLGPGPSAPELPVAAADLLNRRAAEFDAARVLQLLPGSWSVQLLCPFLTGAVRDSVHAR
RTTQVAVGLARSENLIYKYDKMKLKGSSVRLSDKKLCQMCQNPFCEPVFVRYPNGGLVHT
HCAARRHTKPSSPSPGART
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcaccaaagccttcaccctggtccccgccgtcgagcgagagcagctgatgggc
gacggggagcgggtgtcactggagtgtgtggagtgctgcggccggaacctgtacctgggc
accagcgactgcttcgtgtaccacttcctgctggaggagaagaccgtgcccggcggctcg
gccacgttcacggccaccaagcagctgcacagacacctgggtttcaagaagccggtcaat
gagctgcgggcggcgtcggccctctaccggctgctggcgctctgtgacggctccatcacc
ctggtccacatgctgagcctggagcccgtgccctcgggcgcccgcatcaagggggccacg
gccttcgccctgaatgagaacccggtgagcggagaccccttctgcgtggaggtctgcatc
atctccgtcaagcgcagaaccatccaggtgttcctggtgtacgaggaccgcgtgcagatt
gtcagggagctgtccactccggagcagcccctggcagtggcggtggacggccacttcctg
tgcctggccctgaccacccagtacatcatcctcaactatagcacgggcgtcgcccaggac
ctgttccccttctgcagcgaggagaagcggcccatcgtcaagaggatagggagacaggag
ttcctcctggcaggccccggcggattgggcatgtttgccacggtggccggggtatctcag
cgcgcgcccgtgcactggtcagagaacgtggttggagcggccgtctgcttcccatacgtc
attgccctcgacagcgagttcatcactgttcacagcatgctggaccagcagcaaaagcag
accctgccctttaaggaaggtcacatcctccaggattttgaaggaagagtgatcgtcgcc
acgagtaaaggagtttacgtcttggttccgttacctctggaaaaacaaatacaggatctt
ctagcaagccggagagtggaggaggctctggttctagcgaaaggcgcccggaggaacatt
ccaaaggaaaaatttcaggtcatgtaccggcggatcctgcagcaggcgggcttcatacag
tttgcgcagcttcagttcctggaggctaaagaactcttcagaagcggccagctcgacgtg
cgggagctgatctccctgtaccccttcctgctgcccacgtcctcctcgttcacccggtcc
caccctcctctgcacgagtttgcagacctcaaccagctgacccagggcgaccaggagaag
gtggccaggtgcaagcacttcctcatgagctacctgaacgaagtccgcagcacggaggtg
gcgaacggctacaaggaggacgtcgacacggccctgctcaagctgtacacggaggccgac
cacgacagcctgctggacctcctggtcaccgagaacttctgtctgctcgccgacagcgcc
gcctggctggagaagcacaaaaagtactttgcactggggctgctctatcattacaaccac
caagatgctgctgccgttcagctgtgggtgcgtatcgtgaacggggatattcacgactgc
acgcgctcagacctgtacgagtacgtcgtggatttcctcacggacagcctcgacccggac
ctcgtgtggcagtatgccgactgggtcttgcagaaaaatccggaggtcggagttcaagtt
ttcaccaagagacccgtggacgaacaggagagtagatttaacccagatgatatcatcagt
tgccttaagaaatacccgcaagccctggttaagtacctagaacatctggtcatggacagg
agactgcagaaggaggagtaccacacgcacctagccgtcctctacctggatgaggtgctg
cagcagaggcccagcgccagcggcaaggatgcagacgtgaccgagacgcaggccaagcta
cgacgcctgctccagaaatccgatttgtaccgagtccactttctgctggacaggacccgg
ggcgccgggctccccgtggagagcgccatcctgcacgggaagctggagcaacatgaggag
gccctgcgcatcctggtccacgagctggccgacttcccggcggcggaggactactgcctg
tggtgctccgagggccgggcgccgccctaccgccagcggctcttccacctgctgctggcc
gtgtacctgggccccggcccctctgcgcccgagctgcctgtggccgccgcggacctcctg
aaccgccgtgccgccgagttcgacgcggcccgggtcctgcagctgctgccgggctcgtgg
tcggtgcagctgctctgcccgttcctgacgggggccgtgagggacagcgtccacgcccgg
aggaccactcaggtggctgtgggcctggccaggtccgaaaacttgatctacaagtacgac
aagatgaagctgaaaggaagctcagttcggctctcagacaaaaagctttgccagatgtgc
caaaaccccttttgcgagcccgtgtttgttaggtatcccaacggtggtctcgtccacacc
cactgtgcggcccgccggcacacgaagcccagctcccccagccccggggctcggacttga
DBGET
integrated database retrieval system
