KEGG   Physeter macrocephalus (sperm whale): 102980467
Entry
102980467         CDS       T06011                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
pcad  Physeter macrocephalus (sperm whale)
Pathway
pcad03030  DNA replication
pcad03410  Base excision repair
pcad03420  Nucleotide excision repair
pcad03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102980467 (RFC5)
   03410 Base excision repair
    102980467 (RFC5)
   03420 Nucleotide excision repair
    102980467 (RFC5)
   03430 Mismatch repair
    102980467 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcad03032]
    102980467 (RFC5)
   03036 Chromosome and associated proteins [BR:pcad03036]
    102980467 (RFC5)
   03400 DNA repair and recombination proteins [BR:pcad03400]
    102980467 (RFC5)
DNA replication proteins [BR:pcad03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102980467 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    102980467 (RFC5)
Chromosome and associated proteins [BR:pcad03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    102980467 (RFC5)
DNA repair and recombination proteins [BR:pcad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102980467 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    102980467 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_24 AAA_16 AAA_11 AAA_22 AAA_assoc_2 RuvB_N AAA_14 DUF815 DEAD ResIII AAA_5 AAA_19 AAA_30 ATPase_2 PhoH nSTAND3 AAA_7 TniB TIP49 DNAX_ATPase_lid Mg_chelatase NPHP3_N Thioredoxin_6 bpMoxR AAA_28 ABC_tran AAA_3
Other DBs
NCBI-GeneID: 102980467
NCBI-ProteinID: XP_023976412
Ensembl: ENSPCTG00005018019
UniProt: A0A2Y9SGG7
LinkDB
Position
19:15243559..15255860
AA seq 341 aa
METSAHKQQQQQPEAGKIRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLY
GPPGTGKTSTILACAKQLYKEKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGF
KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRLGPLTP
ELMVPRLEHVAEEEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCT
GHPLKSDIANILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRI
HLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVTEA
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggagacctcagcgcacaagcagcagcagcagcagcccgaggcgggcaagatcaggaac
ctgccctgggttgaaaagtaccggccacagacactggatgatctcatttctcatcaggac
atcttgagtaccattcagaagtttatcagtgaggaccgccttccgcacctccttctctat
ggtcctccagggacgggaaagacatccaccatcctggcctgtgctaaacagctgtacaaa
gagaaggaatttggctccatggtcttggagctgaatgcttcagatgaccgaggaatagat
atcgttcggggaccaatcctgagctttgctagcacaaggacaatatttaagaaaggcttt
aaactagtgatcttggatgaagctgatgccatgactcaggacgcccagaacgccttgcgg
agagtgattgagaaatttactgaaaataccagattctgcctcatctgtaactatctgtca
aagatcatccccgccttgcagtcccggtgtacaaggttccgactcggtcccctgaccccc
gaactcatggttccccgcctggaacatgtcgcagaagaagagaaagttgacgtaagtgaa
gacgggatgaaagcgctcgtaactctttccagtggagacatgcgaagggctctgaacatc
ttgcagagcaccaacatggcctttgggaaggtgacagaggagaccgtctacacctgcaca
gggcaccctctcaagtcggacatcgccaacattctggactggatgttgaatcaagacttc
accacggcctacaggaatatcatggagttgaaaactctaaaggggttggcattacatgac
atcctgacagagatacacctgttcgtgcacagagttgactttccatcttcagttcgaata
catttattgaccaaaatggcagacattgagtacagactttctgttggcaccaatgagaag
attcagctgagttccctcattgccgcctttcaagtcaccagagacttgattgtcacagag
gcctag

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