Physeter macrocephalus (sperm whale): 102980467
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Entry
102980467 CDS
T06011
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03030
DNA replication
pcad03410
Base excision repair
pcad03420
Nucleotide excision repair
pcad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102980467 (RFC5)
03410 Base excision repair
102980467 (RFC5)
03420 Nucleotide excision repair
102980467 (RFC5)
03430 Mismatch repair
102980467 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcad03032
]
102980467 (RFC5)
03036 Chromosome and associated proteins [BR:
pcad03036
]
102980467 (RFC5)
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102980467 (RFC5)
DNA replication proteins [BR:
pcad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
102980467 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
102980467 (RFC5)
Chromosome and associated proteins [BR:
pcad03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
102980467 (RFC5)
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
102980467 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
102980467 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_24
AAA_16
AAA_11
AAA_22
AAA_assoc_2
RuvB_N
AAA_14
DUF815
DEAD
ResIII
AAA_5
AAA_19
AAA_30
ATPase_2
PhoH
nSTAND3
AAA_7
TniB
TIP49
DNAX_ATPase_lid
Mg_chelatase
NPHP3_N
Thioredoxin_6
bpMoxR
AAA_28
ABC_tran
AAA_3
Motif
Other DBs
NCBI-GeneID:
102980467
NCBI-ProteinID:
XP_023976412
Ensembl:
ENSPCTG00005018019
UniProt:
A0A2Y9SGG7
LinkDB
All DBs
Position
19:15243559..15255860
Genome browser
AA seq
341 aa
AA seq
DB search
METSAHKQQQQQPEAGKIRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLY
GPPGTGKTSTILACAKQLYKEKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGF
KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRLGPLTP
ELMVPRLEHVAEEEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCT
GHPLKSDIANILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRI
HLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVTEA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggagacctcagcgcacaagcagcagcagcagcagcccgaggcgggcaagatcaggaac
ctgccctgggttgaaaagtaccggccacagacactggatgatctcatttctcatcaggac
atcttgagtaccattcagaagtttatcagtgaggaccgccttccgcacctccttctctat
ggtcctccagggacgggaaagacatccaccatcctggcctgtgctaaacagctgtacaaa
gagaaggaatttggctccatggtcttggagctgaatgcttcagatgaccgaggaatagat
atcgttcggggaccaatcctgagctttgctagcacaaggacaatatttaagaaaggcttt
aaactagtgatcttggatgaagctgatgccatgactcaggacgcccagaacgccttgcgg
agagtgattgagaaatttactgaaaataccagattctgcctcatctgtaactatctgtca
aagatcatccccgccttgcagtcccggtgtacaaggttccgactcggtcccctgaccccc
gaactcatggttccccgcctggaacatgtcgcagaagaagagaaagttgacgtaagtgaa
gacgggatgaaagcgctcgtaactctttccagtggagacatgcgaagggctctgaacatc
ttgcagagcaccaacatggcctttgggaaggtgacagaggagaccgtctacacctgcaca
gggcaccctctcaagtcggacatcgccaacattctggactggatgttgaatcaagacttc
accacggcctacaggaatatcatggagttgaaaactctaaaggggttggcattacatgac
atcctgacagagatacacctgttcgtgcacagagttgactttccatcttcagttcgaata
catttattgaccaaaatggcagacattgagtacagactttctgttggcaccaatgagaag
attcagctgagttccctcattgccgcctttcaagtcaccagagacttgattgtcacagag
gcctag
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