Physeter macrocephalus (sperm whale): 102980538
Help
Entry
102980538 CDS
T06011
Symbol
RB1CC1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad04140
Autophagy - animal
pcad04211
Longevity regulating pathway
pcad05010
Alzheimer disease
pcad05014
Amyotrophic lateral sclerosis
pcad05016
Huntington disease
pcad05017
Spinocerebellar ataxia
pcad05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102980538 (RB1CC1)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
102980538 (RB1CC1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
102980538 (RB1CC1)
05014 Amyotrophic lateral sclerosis
102980538 (RB1CC1)
05016 Huntington disease
102980538 (RB1CC1)
05017 Spinocerebellar ataxia
102980538 (RB1CC1)
05022 Pathways of neurodegeneration - multiple diseases
102980538 (RB1CC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pcad01009
]
102980538 (RB1CC1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcad04131
]
102980538 (RB1CC1)
03029 Mitochondrial biogenesis [BR:
pcad03029
]
102980538 (RB1CC1)
Protein phosphatases and associated proteins [BR:
pcad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102980538 (RB1CC1)
Membrane trafficking [BR:
pcad04131
]
Autophagy
Autophagosome formation proteins
ULK complex
102980538 (RB1CC1)
Mitochondrial biogenesis [BR:
pcad03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
102980538 (RB1CC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
ubiquitin
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
102980538
NCBI-ProteinID:
XP_023982752
Ensembl:
ENSPCTG00005007860
UniProt:
A0A2Y9SX28
LinkDB
All DBs
Position
15:78503576..78564362
Genome browser
AA seq
1589 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIHSKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILSERLPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSNYLQ
SVEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDALPEREGSEKADMKTSTEL
VLSPDTPATMSKPSLTSFHKSVEHVAPDTTDAESGKEMREPCPSPVRQDEAAVDAKDGDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIRPFIAECRQTIANLDNQNMKA
IKGLEDRLYALDQMIASCGRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVKIVEALSTVPQMYCLAAVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKSKRESFGKL
FRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPL
LCDFDPLHQHVLALHNLVKAAQSLDEMSQTITDLLSEQKASASQTSPQAASSPRIESTTG
MTTTTSPRTPPPLTVRGPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIEQTLHQASLDL
DSLAESPESDFMSAVNEFVIEENLSSPNPVSDPQSPEMMVESLYSSVINAIDSRRMQATS
ARGQEHSGHHASLSVQLEKCRVSAHDSHRGVQTIKEDLCRFRALVRREQRDLSDSLRCTA
VEIRSIIEKVKCSLEITLNERHQEELQSLKSDYEGKLAALVKESEENENEITKLKGDLVC
LEEVLQNKDNEFALVKREKEAVICLQKEKDQKLLEMENIMHTQHCEIEELKQSRETVLED
LEKLHVEHCEKLQLLRAELQCLEQRHLKDLEDTLQVRHTEELEKVVTRHEACLEQLEKES
QQRIQQMQDAHAAAAQERERRLQELKLQVSHLSDVRCKLEVELALKEAETDEIKILLEES
RAQQKETLKSLVEQETEHLRTEISKLNQKIQDDTENYQVGLAELRTLMTIEKDQCISELI
SRHEEESDMLRAELSKVTSLHHQAFEVEKGLKEELAELQSKLDSELSALEKQKDEKITQQ
EEKYEAIIQKLEKDKEECVVRHEQDREQLIQRLNCEKDTAVETARKEVNLEREAAEKELL
EKMKHLESQIAKSHTVESTKEDSSSLIAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVR
TSLIAEQQTNFNTVLTREKMRKENIISDLSDKLKSTMQQQERDKDLIESLSEDRARLLEE
KKRLEEEVSRLRGGGPVPSPGVAAAPELYGACAPEPPAEAPDALGEGRLDSALETSTMSV
RENVHMLSEERQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKIAIRDFQVGD
LVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVMEKEYC
QAKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtatttctggtgaacactggaaccaccctgacatttgacactgaactt
acagtgcaaactgtggctgacctgaagcatgccatccacagcaagtacaagatcgctatt
cagcaccaggtgttggtggtcaacgggggagagtgcatggctgcagaccggagagtgtgc
acctacagtgccgggacggacacaaatccaatttttctttttaacaaggaaatgatctta
tctgaacgtctacctgctattcctaaaactaccttttcaacagaaaatgacatggaaata
aaagttgaagagtcccttatgatgcctgcagtttttcacactgttgcttcaaggacacaa
cttgcagtggaaatgtatgaagttgccaagaaactttgctctttctgtgaaggtctggtc
catgatgaacatctgcaacaccaaggctgggctgcaatcatggccaatctggaggattgt
tcaaattcctaccagaagctacttttcaaatttgaaagtatttattcgaattatctgcaa
tccgtagaggacatcaagttaaaacttactcatttaggaactgcggtttcagtcatggcc
aagattccactgttggagtgcctaaccagacatagttacagggagtgtttgggaagactg
gatgccttgcctgaacgtgaaggctcagaaaaggccgacatgaaaacctccactgaactg
gtgctctctcccgatacgcctgcaacaatgagcaaaccctccttaacctcatttcacaag
tccgtggaacatgtagccccagacaccacagatgctgaaagtggaaaagaaatgagggaa
ccttgtccaagtcctgtccggcaggacgaagctgcagtagatgctaaagacggtgacctg
cctttttttaatgtttctttgttagactggatcaatgtgcaggataggcctaatgacgtg
gaatcgctggtcaggaagtgctttgattccatgagcaggcttgatccacggatcattcga
ccctttatagcagaatgccgtcagactattgccaatctcgataatcagaacatgaaggcc
atcaaggggctggaggaccggctgtacgcgctggaccagatgatcgccagctgcggccga
ctcgtcaacgagcagaaagaactcgctcagggatttttagctaatcagatgagagctgaa
aacttgaaggatgcgtctgtgttacctgatttgtgcctgagtcatgcaaatcagttgatg
attatgttgcaaaatcatagaaaactgttggatattaaacagaagtgcaccactgccaaa
caagaactagcaaataaccttcatgtcagactgaagtggtgttgctttgtgatgcttcat
gctgatcaggatggagagaagttgcaggctttgctccgcctcgttatagagctcttagag
agagtcaagatcgttgaagctctgagtacagttcctcagatgtactgcttagctgctgtt
gaggttgtcaggagaaaaatgttcataaaacactacagggagtgggctggtgctttagtc
aaagacggaaagcgattatatgaggctgaaaagtcaaaaagggaatcctttgggaaatta
tttaggaagtcctttttaagaaatcgtctgtttaggggattggactcctggcccccatcc
ttttgtacacagaagcctcgaaagtttgactgtgaacttccagatatttcattaaaagat
ttacagtttctgcaatcattttgtccttccgaagttcagccattcctcagggtgccctta
ctttgtgactttgaccctctacaccagcatgtacttgctctacataatttggtaaaagca
gcacaaagtttggatgaaatgtcacagaccattacagacctactgagtgaacaaaaggct
tccgcgagtcagacgtccccacaggcggcttcctcaccccggatagaaagcacgacagga
atgacaactactacctcacccagaacaccccctccactcactgtgcggggccccttgtgt
cctgcagtctgtcccttagaagaattgtctccggatagcattgatgcacatacatttgat
tttgaaactatcccccatccaaacatagaacagactcttcaccaggcttcgctagacttg
gactcattagcagaaagtcctgaatcagatttcatgtctgcagtgaatgagtttgtaata
gaggaaaacttgtcatcgcccaaccctgtcagtgatccacagagtccagagatgatggtg
gagtccctttactcctcagtcatcaatgccatcgacagcaggcgaatgcaggccacgagt
gcccgaggtcaggagcactcgggccaccacgcgtcgctcagcgtgcagctggagaagtgc
cgtgtctctgcccacgactcgcaccgcggcgtgcagaccataaaggaggacctttgccgc
ttccgagcactggtgcggagggagcagcgtgacctctcggattctttaaggtgtaccgcg
gtagaaataagaagcattattgaaaaagtaaaatgctctttggaaataacactaaatgaa
agacaccaggaagagctacagtctttaaaaagtgactatgagggcaaacttgctgcacta
gtaaaggagagtgaagaaaatgaaaacgaaatcacaaagctgaaaggagacttggtgtgc
cttgaggaggttttacaaaataaagacaacgaatttgctttggttaaacgtgagaaagaa
gctgtcatctgcctgcagaaggagaaggatcagaagttgttagagatggaaaatataatg
cacacgcaacactgtgagattgaagaactgaagcagtcacgagagaccgtgctagaagac
ttagagaagctgcacgtggagcactgtgagaagctccagctgttgagggcggagctccag
tgcctggagcagagacacctgaaggacttagaggacactctgcaggtcaggcacactgag
gagctcgagaaggtcgtgacccgccacgaggcctgtttggagcagttagaaaaggaaagt
caacaaagaatccagcagatgcaagatgctcacgccgcagccgcccaggaaagggagcgg
cggctccaggagttaaagctccaggtttctcacttgtcggacgtgagatgtaagttagag
gttgaacttgccctgaaggaagcagaaacggacgaaataaaaattttgctggaggaaagc
agagcccagcagaaggagaccttgaaatctctcgtcgagcaagagacagaacatttgaga
acagagataagtaaactaaaccaaaagattcaagatgacactgaaaattaccaggtgggc
ttggccgaactaagaactttaatgacaattgaaaaagatcagtgcatttcagagttaatt
agtagacatgaagaagaatctgatatgcttagagccgaattaagcaaagtgacatcattg
catcaccaagcatttgaagtagaaaaaggcctgaaagaagaattggctgaactgcagagt
aaactggactcagaactgagtgctcttgagaaacaaaaagatgagaaaatcacccagcaa
gaagagaaatacgaagctattatccagaaacttgaaaaagacaaagaggaatgtgtcgtg
aggcatgaacaggaccgagaacagctgattcagaggcttaattgtgaaaaagacacggct
gttgagactgcccgtaaagaagtgaacttggaaagggaagctgctgagaaggagttgtta
gaaaaaatgaaacatcttgagagtcaaatagcaaaaagtcataccgttgaatctaccaaa
gaagattcttcgagcctaatcgctgaacttcaagaaaagctccaggaagaaaaagctaag
tttctagaacaacttgaagagcaggagaaaaggaaaaacgaagaaatgcagaatgtgcgg
acatctttgattgctgagcaacagaccaattttaatactgttttaacaagagagaaaatg
agaaaagagaacataatcagtgatctcagtgacaagctgaaaagcacgatgcagcagcaa
gagcgggacaaagatttgatcgagtccctgtctgaggaccgcgcgcgcttgctggaggag
aagaagaggctggaggaggaggtcagccggctacggggcggcggccctgtcccctccccg
ggggtggccgccgcccccgagctgtatggggcctgtgcgcccgagcccccggcggaggcc
ccggatgccctcggcgaaggcaggctggactcagcgctggagaccagcacgatgtctgtc
cgggaaaacgtccacatgctctctgaagaaaggcagaggataatgctgttggaacgaaca
ctacagttgaaagaagaagaaaacaagcggttgaatcagagactgatgtctcagagcatg
tcctccgtatcctcaaggcattcggaaaagatagctattagagattttcaggtgggagat
ctggtcctcatcatcctggacgaacgccatgacaattacgtgctcttcaccgtgagcccc
accttgtacttcctgcactcagagtcgctgcctgccctggacctcaaaccaggtgagggg
gcttcaggtgcatctcgaagaccatgggtccttggaaaagtgatggagaaggagtactgt
caggccaaaaaggcacaaaacagatttaaagttcctttggggacaaagttttacagagtg
aaagctgtgtcatggaataagaaagtgtaa
DBGET
integrated database retrieval system
