Physeter macrocephalus (sperm whale): 102980841
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Entry
102980841 CDS
T06011
Symbol
VLDLR
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad05017
Spinocerebellar ataxia
pcad05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
102980841 (VLDLR)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
102980841 (VLDLR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcad04131
]
102980841 (VLDLR)
Membrane trafficking [BR:
pcad04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
102980841 (VLDLR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
EGF_LRP2
hEGF
Motif
Other DBs
NCBI-GeneID:
102980841
NCBI-ProteinID:
XP_023982496
Ensembl:
ENSPCTG00005004995
UniProt:
A0A2Y9SV02
LinkDB
All DBs
Position
9:45722136..45753926
Genome browser
AA seq
845 aa
AA seq
DB search
MGTSARWALWLLLALCWAPRESGTTGAGRKAKCEPSQFQCTNGRCITLLWKCDGDEDCAD
GSDEKNCVKKTCAESDFVCNNGQCVPNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISC
GARSTQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCS
DGSDELDCAPPTCGAHEFRCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCP
ASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCQPDQFECEDGSCIHGSRQCNGI
RDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDEPLKECHVNEC
LVNNGGCSHICKDLVIGYECDCAAGFELIDRKTCGDIDECQNPGICSQICINLKGGYKCE
CSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAA
QKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVA
TLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRALVTADIQ
WPNGITLDLIKGRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWI
DGENEAVYGANKFTGSELATLVNNLNDAQDIIVYHALVQPSGKNWCEEDMENGGCEYLCL
PAPQINDHSPKYTCSCPNGYNLEDNGRECQKINVTTAVSEVSVPPKGTSAAWAILPLLLL
AMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYPAISVVST
DDDLA
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgtccgcgcgctgggcgctctggctgctgctcgcgctgtgctgggcgccccgg
gagagcggcaccaccggagcgggaagaaaagccaaatgtgaaccctcccaattccagtgc
acaaatggccgctgtattacgctgctatggaaatgcgatggggacgaagactgtgctgat
ggcagtgacgaaaagaactgtgtgaagaagacgtgtgccgagtctgactttgtgtgcaac
aatggccagtgtgttcccaaccgatggcagtgtgatggggatcccgactgtgaagatggt
tctgatgaaagcccagagcagtgccatatgagaacatgccgcataaatgaaatcagctgt
ggcgcccgttccactcagtgtatcccagtgtcctggagatgtgatggtgaaaatgattgt
gacagtggagaagatgaagaaaactgtggcaacataacgtgcagccctgatgagttcact
tgctccagtggccgctgcatctccaggaatttcgtctgcaatggccaggatgactgtagc
gacggcagcgacgagcttgactgcgccccacccacctgcggggcccacgagttccggtgc
agcacctcctcctgcatccccatcagctgggtgtgcgatgacgacgcagactgctcagac
cagtcagatgagtccctcgagcagtgtggccgccagccagtgatccacaccaagtgccca
gccagcgagatccagtgcggctctggcgagtgcatccacaagaagtggcgatgtgacggg
gatcctgattgcaaggatggcagtgatgaggtcaactgtccttcccgaacctgccaacct
gatcagtttgagtgtgaggatggtagctgcatccacggcagcaggcagtgtaacggcatc
cgagactgtgtcgacggttctgacgaagtcaactgcaaaaatgtcaatcagtgcttgggc
cctgggaaattcaagtgcagaagcggggaatgcatagatatcagtaaagtgtgtaaccag
gagcaggactgcagggactggagtgatgagcccctgaaagaatgtcatgtaaatgaatgc
ttggttaacaatggcggatgctcccatatctgcaaagacctagttataggctacgaatgt
gactgtgcagctgggtttgaactgatagataggaaaacctgtggagatattgacgaatgc
caaaatccgggaatctgcagtcaaatttgtatcaacttaaaaggcggttacaagtgtgaa
tgtagtcgtggctatcaaatggatcttgccactggcgtgtgcaaggcagtaggcaaagag
ccaagtctgatcttcactaatagacgagacatcaggaagattggcttggagaggaaagaa
tatatccaactagttgaacagctaagaaacactgtggctctcgatgctgacattgctgct
cagaaactattctgggctgatctaagccaaaaggccatcttcagtgcctcaattgatgac
aaggttggtagacatgttaaaatgatcgacaatgtctataatcctgcagccattgctgtt
gattgggtgtacaagaccatctactggactgatgcggcttctaagactatttcagtagct
accctagatggaaccaagaggaagttcctgtttaactctgacttgcgagagcctgcctcc
atagctgtggacccattgtctggctttgtttactggtcagactggggtgaaccagctaaa
atcgaaaaagcaggaatgaatggatttgatagacgggcgctggtgacagcggacattcag
tggcctaacggaattacacttgacctcataaagggccgcctctattggctggattccaaa
ttgcacatgttatccagtgtggacttgaacggccaagatcgcaggatagtcctaaagtct
ctggaattcctagctcatcccctcgcactcacaatatttgaggatcgtgtctactggata
gatggggaaaatgaagccgtctacggcgccaataaattcactggatcggagctggccact
ctagttaacaaccttaacgatgcccaagacatcatcgtctatcatgcacttgtacagcca
tcaggtaaaaattggtgtgaagaagacatggagaatggaggatgtgaatacctctgcctg
ccagccccacagattaatgaccactctccaaaatatacctgttcctgtcccaatggatac
aatctagaggacaatggccgagagtgccaaaagatcaatgtgaccacagcagtatcggag
gtcagtgttcccccaaaagggacttctgctgcctgggccatccttcccctcttgctctta
gcaatggcagcagtaggtggctacttgatgtggcggaattggcaacacaagaacatgaaa
agcatgaactttgacaatcctgtgtacttgaagaccactgaagaggacctgtcaatagac
attggtagacacagtgcttctgtcggacacacgtacccagcaatatccgttgtaagcaca
gacgatgatctagcttga
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