Physeter macrocephalus (sperm whale): 102981542
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Entry
102981542 CDS
T06011
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102981542 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcad00536
]
102981542 (COL13A1)
Glycosaminoglycan binding proteins [BR:
pcad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102981542 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102981542
NCBI-ProteinID:
XP_028336659
Ensembl:
ENSPCTG00005007462
UniProt:
A0A455AL71
LinkDB
All DBs
Position
20:21924004..22019420
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AA seq
635 aa
AA seq
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MPGRVGGKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGE
MGPPGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIQRRTFQGEQGQAGIQGPPGPPGPPG
PSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAA
AGMKGEPGIPGAKGDPGATGKLGPPGLPGKTGQRGEKGAAGPPGLLGLLGQKGEKGDAGN
SIGGGRGEPGPPGLPGPPGPKGEAGADGQAGAPGRQGDKGEPGAAGEQGPAGPKGSKGEP
GKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGE
KGPRGKPGDVGPPGPQGPPGKAGPAGMKGEDGPPGNPGEKGEKGEMGQPGPPGLDGPTGE
KGEPGDQGRPGATGLPGPIGLPGFTGEKGEDGEKGDPGVEVPGPPGPEGPPGPPGLQGVP
GPKGEAGLDGAKGEKGVQGEKGDRGPLGLPMVLSAGCTLESPGAFQGASGLDGRPGPPGT
PGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGHRGFKGEKGEPGL
PGLDGLDAPCPLGEDGLPVQGCWNKGQSPWLVAKK
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcctggacgtgtgggaggaaagggccaaccaggcgagaagggggccccaggagatgcc
gggatgtccatcatcggtccccgcggccctcccggtcagccgggcactcgaggttttcct
ggatttccgggtcccattgggcttgacggcaaaccgggccgccccggaccaaaaggggag
atgggacctccaggacaaaaaggagaaaagggtcagtgtggagagtacccacaccggctg
ctgcctctcctcaattcagtgcggctggctccaccgccagtcattcaaaggcggaccttc
cagggtgaacagggccaggctggcatccaaggcccaccagggccaccaggccctcctgga
ccgagtggacctctggggcacccaggactgccagggcccatggggccacccggcttacct
gggcctcctggaccaaagggagacccggggatccagggctaccacggccggaagggagaa
cgaggcatgccagggatgccgggcaaacacggagcaaagggggctcctggaatcgctgcc
gcggggatgaagggtgagcctgggatcccaggagccaagggagacccaggagcaacaggg
aagctggggcccccaggtttgccgggaaagacggggcagaggggtgagaagggggctgcg
ggcccccctgggctactcggcctcctagggcagaagggagaaaaaggtgatgctggcaac
tccattggagggggcagaggggagcctggtcccccagggctccctgggcccccagggcca
aagggggaagctggagctgatggccaggcgggcgccccaggacggcaaggagacaagggg
gagcctggagcagctggagaacagggacctgctggccccaagggctccaagggcgaaccc
gggaaaggagagatggtggactacaacggaaacatcaacgaggctctccaggagatccgg
acactggccctgatggggccccctggtcttcctgggcagattggcccacccggagctcca
gggatcccaggccagaagggggagattgggctgcccggccctcccggacacgatggggaa
aagggacctcgaggcaaaccaggagatgtgggccctcctggtccccaaggccccccagga
aaggctgggcctgcaggaatgaagggagaagatggccctccggggaacccaggagagaag
ggggagaaaggggagatggggcagccaggcccaccgggtctagacggcccaactggggag
aaaggagaaccaggtgaccaagggagacctggagcgaccggattgcctggcccaatcggg
ctcccaggattcacgggagagaaaggagaagacggggagaagggtgacccaggagtggag
gttcctgggccaccagggccagagggacctcccggaccgccggggctccaaggcgttcct
ggaccaaagggggaagcagggctagatggagcaaaaggagagaagggcgtccagggagaa
aaaggagaccgaggtcctctgggattacccatggttctcagtgctggctgcacattggaa
tcccctggagctttccaaggagcttcaggtttggacggcaggcctgggccaccgggtact
ccaggaccaattggagttccaggcccagcgggaccaaagggagagaggggcagcaaaggc
gaccctgggatgacaggaccaacgggagcagctgggcttcctggtttacacggaccaccc
ggggacaaaggaaaccggggacaccgaggttttaaaggagagaaaggggagccagggtta
ccagggctggacggactggatgccccgtgcccactgggtgaagatggcttgccagtccag
ggctgctggaataagggccagagtccatggttagtagccaagaagtga
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