KEGG   Physeter macrocephalus (sperm whale): 102982325
Entry
102982325         CDS       T06011                                 
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
pcad  Physeter macrocephalus (sperm whale)
Pathway
pcad03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102982325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pcad03041]
    102982325
Spliceosome [BR:pcad03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    102982325
 Complex C
   U5 SnRNP specific factors
    102982325
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C WDR54 WD40_like
Other DBs
NCBI-GeneID: 102982325
NCBI-ProteinID: XP_054947599
UniProt: A0A9W2X7Z1
LinkDB
Position
16:45743841..45744987
AA seq 358 aa
MIEQQKRKGPELPLVPVKRPRHELLLGAAGSGPXAGQQQVVPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGPVMELHYNT
DGSVLFSASTDKTVAVWESETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKRW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGKVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGFINEVAFHPEEPIILSASSDKRLYMGKIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatagaacagcaaaagcgaaagggcccagagttgccgctggtcccagtcaagcggccg
cggcatgaattgctactgggagcggcggggtcgggcccangagccgggcagcagcaggtg
gtgccgggagctttgctgcaagcggggcctccaagatgttcctcccttcaagccccaatc
atgcttctctcaggacatgaaggggaagtgtattgctgcaagtttcaccccaatggatcc
accttagcatctgcaggatttgaccgactgatattgctgtggaatgtctatggtgactgc
gataactatgctacattgaagggacacagtggaccagtgatggaactgcattataacaca
gacggcagtgtgctcttctcagcatccacagataaaactgtggcggtgtgggagagtgaa
acaggagagagggttaaaagactgaaggggcacacttcctttgtgaattcctgttatccg
gccaggaggggtccccagcttgtctgcactggcagtgacgacggtacagttaagcgttgg
gacatccgtaagaaagcagcgatccagacatttcagaacacctatcaagtgttagctgtg
accttcaatgacacaagtgatcagattatttctggtggaatagataacgatatcaaggtc
tgggacctgcgccaaaataagctgacctacacgatgagaggccatgcagactcagtgact
ggcctgagtttaagctctgaaggctcttatctcttgtccaatgcaatggacaatacagtg
cgggtctgggatgtccggccatttgctcccaaagaaaggtgtgtgaagatatttcaagga
aaggtacacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaag
atagcagctggctcagccgacaggtttgtgtatgtgtgggataccacaagcaggaggatt
ttgtataagctacccggccatgctggcttcatcaatgaagtggctttccaccccgaggaa
cccatcattctctcagcatccagtgacaagagactatatatgggaaagattcagtga

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