Physeter macrocephalus (sperm whale): 102982749
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Entry
102982749 CDS
T06011
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03015
mRNA surveillance pathway
pcad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102982749
09123 Folding, sorting and degradation
03018 RNA degradation
102982749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
102982749
03041 Spliceosome [BR:
pcad03041
]
102982749
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102982749
mRNA cycle factors
Stress granule specific factors
102982749
Spliceosome [BR:
pcad03041
]
Complex C
Other components
Complex C specific factors
102982749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
102982749
NCBI-ProteinID:
XP_054940657
UniProt:
A0A9W2WNA8
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All DBs
Position
5:complement(17367882..17370093)
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AA seq
645 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMVTRSSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNIPSCKVVCDENGSKGYAFVHFETQEAADKAIEKVNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYLKNFGEEVDDESLKELFSQFGKTLSVKVMRDTSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGHAQKKVERQAELKRKFEQLKQERISRYQGVNLYVKN
LDDTIDDEKLRKEFAPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVTLAQRKEEFRNAHLTNQYMQRVAGMRALPTNAILNQFQPAAGGYFVPAVPQAQGR
PPYYTRNQLAQMRPNPRWQQGGTPQGFQGMPSAICQSGPRPALRHLAPTGSEFLDRLAMD
FGGAGAAQQGLTDSCQSGGVSAAVQNLAPRXAVAASAAQAFAPYKYASSVRSPQPAIQPL
QAPQPAVHVQGXEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN
SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgacatggtcacccgtagctccctgggttatgcctacgtcaacttccag
cagccggctgacgctgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccagtccgtatcatgtggtctcagagggatccctctttgagaaaatctggcgtgggaaat
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattccgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaggaggctgccgacaaggccatcgagaaggtgaatggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgagcttggagccaaagctaaggaattcaccaatgtttatctcaaaaactttggggaa
gaggtggatgatgagagtctgaaagagctattcagccagtttggtaagactctaagtgtc
aaggtgatgagagataccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggccgtggaggagatgaatggaaaagaaatcagtgggaaagtc
attttcgtcggccatgcacagaagaaagtggaacggcaggccgagttaaagcgaaaattt
gaacagctgaaacaggagagaattagtcggtatcagggggtgaacctctacgttaagaac
ttggatgacaccattgatgatgagaagttaaggaaagagtttgctccttttggatcaatc
accagtgctaaggtgatgctggaggatgggagaagcaaagggtttggctttgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcactgagatgaacggacgcatcgtgggctcc
aagccactgtatgtcaccctggcccagagaaaagaagagtttcgaaatgctcacctgacc
aaccagtatatgcagcgggtggccggaatgagagcgctccccaccaatgccatcttaaat
cagttccagcctgcagctggcggctactttgtgccagcagttccacaggctcagggaaga
cctccatattacacacgtaaccagttagcacagatgaggcctaatccacgctggcagcaa
ggtgggacacctcaaggcttccaaggaatgccaagtgctatatgccagtctgggcctcgt
ccagctcttcgccatctggctccaactgggtctgagttcctggaccgcttggctatggac
tttggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggtgtt
tccgcagcagtgcagaacctagcacctcgtnctgctgttgctgcctctgctgctcaggct
tttgcaccttacaaatacgcctccagtgtccgcagccctcagcccgccatccagcccctg
caggcaccccagcctgcggtccacgtgcaggggtaggagccactgaccgcctccatgctg
gccgcagcacccccgcaggaacagaaacagatgctgggtgaacgtttgttcccgctcatc
cagacgatgcactcaaacctggctgggaagattacggggatgctgctggagattgacaac
tcggagctgctgcacatgctggagtcccccgagtctcttcgctccaaggtggatgaagct
gtggcggtcctacaggctcatcatgccaagaaagaagctgcccagaaggtgggcgctgtt
gctgctgctacctcttag
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