Physeter macrocephalus (sperm whale): 102983025
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Entry
102983025 CDS
T06011
Symbol
VCL
Name
(RefSeq) vinculin isoform X2
KO
K05700
vinculin
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad04510
Focal adhesion
pcad04520
Adherens junction
pcad04670
Leukocyte transendothelial migration
pcad04810
Regulation of actin cytoskeleton
pcad04820
Cytoskeleton in muscle cells
pcad05100
Bacterial invasion of epithelial cells
pcad05146
Amoebiasis
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102983025 (VCL)
04520 Adherens junction
102983025 (VCL)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102983025 (VCL)
04810 Regulation of actin cytoskeleton
102983025 (VCL)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
102983025 (VCL)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
102983025 (VCL)
09174 Infectious disease: parasitic
05146 Amoebiasis
102983025 (VCL)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pcad04812
]
102983025 (VCL)
04147 Exosome [BR:
pcad04147
]
102983025 (VCL)
Cytoskeleton proteins [BR:
pcad04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
102983025 (VCL)
Exosome [BR:
pcad04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102983025 (VCL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vinculin
Talin_IBS2B
VMAP-M0
Motif
Other DBs
NCBI-GeneID:
102983025
NCBI-ProteinID:
XP_023987928
Ensembl:
ENSPCTG00005020063
UniProt:
A0A2Y9TCD2
LinkDB
All DBs
Position
20:25361459..25471203
Genome browser
AA seq
1134 aa
AA seq
DB search
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAE
INEIIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQAIR
QILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGASPVAMQKAQQVSQGL
DVLTAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAE
LCDDPKERDDILRSLGEISALTSKLADLRRQGKGDSPEARALAKQVATALQNLQTKTNKA
VANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQD
LLAKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKARMQEAMTQEVSDVFS
DTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGRLGATAEKAAAVGTANKSTVEG
IQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTK
SLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVENSEDPKFR
EAVKAASDELSKTISPMVVDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEP
DFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMM
AARQLHDEARKWSSKPGNPAAKVGVSAVAEADAADAVGSPVPPDMEDDYEPELLLMPSSQ
PVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAK
DIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNIS
DEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgtttcatacgcgcacgattgagagcattctggagccggtggcgcagcagatc
tcgcacctggtgatcatgcacgaggaaggcgaggtggacggcaaagccatccctgacctc
accgcgcctgtggccgccgtgcaggcggccgtcagtaacctcgttcgggttggaaaagag
actgttcaaaccactgaggatcagattttgaagagagatatgccaccagcatttattaag
gtggagaatgcttgcaccaagcttgtccaggcagcccagatgcttcagtcagacccttac
tcagtgcctgctcgagattatctaattgatggatcaaggggcatcctctccggcacatca
gacctgctcctcaccttcgacgaggctgaggttcgtaaaattattagagtttgcaaagga
attttggaatatcttacagtggcagaggtggtggaaactatggaagatttggtcacttac
acaaagaatcttggaccaggaatgactaagatggccaagatgattgatgagagacagcag
gagctgactcaccaggagcaccgagtgatgttggtgaactcgatgaacaccgtgaaagag
ttgctgccagttctcatttcagctatgaagatttttgtaacaactaaaaactcaaaaaac
caaggaattgaagaagctttgaaaaatcgtaattttactgtagaaaagatgagcgctgaa
attaatgagatcattcgtgtattacaactcacttcttgggacgaagatgcctgggccagc
aaggacactgaagccatgaagagagcgttggcctccatagactctaaactgaaccaggct
aaaggttggctccgtgaccccagtgcctccccaggtgatgctggtgaacaggccatcagg
cagatcttagatgaagctggaaaagttggtgaactctgtgcaggcaaagaacgcagggag
atcctgggaacctgcaaaatgctagggcagatgactgatcaagtggctgacctccgagcc
agaggacaaggagcctcaccagtggccatgcagaaagcccagcaagtgtctcagggtctg
gatgtgctcacagcaaaagtggaaaatgcagcccgcaagctggaagccatgaccaactca
aagcagagcattgcgaagaaaattgatgctgctcagaattggcttgcagatccaaatggt
ggaccagaaggagaagaacagattcgaggggctttggctgaagctcggaaaatagcggaa
ttatgtgatgatcctaaagagagagatgacattctacgttctcttggagaaatatctgct
ctgacttctaaattagcagatctacgaagacagggaaaaggagattccccagaggcccga
gcattggccaaacaggtggccactgccctacagaacttgcagaccaaaaccaacaaggct
gtggccaacagcagacctgccaaagcagctgtccaccttgagggcaagattgagcaggca
cagcggtggattgataatcccacagtggatgaccggggagttggtcaggctgccatccga
gggcttgtggccgaaggtcatcgcctggcaaatgtcatgatggggccttatcgccaagat
cttcttgcaaagtgtgaccgagtggaccagctgacggcccagctggctgacctggctgcc
agaggggaaggggagagtcctcaggcgagagcccttgcatctcagctccaagactcttta
aaggatctgaaagcccggatgcaggaggccatgactcaggaggtgtcagatgttttcagt
gataccacaactcccatcaagctgttggcagtggcagccactgcccctcctgatgcaccc
aatagggaagaggtatttgatgagagagcagctaactttgaaaaccattcaggaaggctt
ggggccacggcagagaaggcggctgctgttggaactgctaataaatcaacggtggaaggc
attcaggcctcagtgaagacagcccgagaactcacaccccaggtcgtctcagcggctcgc
atcttacttaggaatcccggaaatcaagctgcttatgaacattttgagaccatgaagaac
cagtggatcgataatgttgaaaaaatgacagggctggtggacgaagccattgacaccaaa
tctctgttggatgcttccgaagaagcaattaaaaaagacctggacaagtgtaaagtcgcc
atggccaatattcagcctcagatgctggtcgctggggcaaccagcattgctcgtcgggcc
aaccggatcctgctggttgccaagagggaggtggagaactctgaggatcccaagttccga
gaggctgtgaaagccgcctctgacgaattgagcaaaaccatctccccaatggtggtggat
gcaaaggctgtggcaggaaacatttctgaccctggcctgcaaaagagcttcctggactca
ggataccggatcctgggagcagtggccaaggtcagagaagccttccaacctcaggagcct
gacttcccacctcctccgccagaccttgaacagctccgactgacagatgagcttgctcct
cccaaaccacctctgcctgagggtgaggtccctcctcccaggcccccaccaccagaggag
aaggatgaagagttccctgagcagaaagctggggaggtgattaaccagccaatgatgatg
gctgccaggcagctccatgatgaagctcgcaaatggtccagcaagccgggtaacccagcc
gctaaggtgggtgtaagtgctgtagctgaggcagatgcggctgacgctgttgggtcccct
gtcccccctgacatggaagacgattacgaacctgagctgctgttaatgccatccagtcag
ccggtcaaccagcccattctggcagcggctcagtcattgcatcgggaagctaccaagtgg
tctagtaagggcaatgacatcattgcagcagccaagcgcatggctctgctgatggctgag
atgtctcggctggtcagagggggcagcggtaccaagcgggcactgattcagtgtgccaag
gacatagccaaggcctcagatgaggtgactcggttggccaaggaggttgccaagcagtgc
acagataagcggattagaaccaacctcttacaggtatgcgagcgaatcccaaccataagc
acccagctcaaaatcctgtccacagtgaaggccaccatgctgggccggaccaacataagc
gacgaggagtctgagcaggccacagagatgctggttcacaatgcccagaacctcatgcag
tctgtgaaggagactgttcgagaagcagaagcagcttcaatcaaaattcgaacagatgct
ggatttacactgcgctgggttagaaagactccctggtaccagtag
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