Physeter macrocephalus (sperm whale): 102983114
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Entry
102983114 CDS
T06011
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03030
DNA replication
pcad03410
Base excision repair
pcad03420
Nucleotide excision repair
pcad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102983114 (RFC1)
03410 Base excision repair
102983114 (RFC1)
03420 Nucleotide excision repair
102983114 (RFC1)
03430 Mismatch repair
102983114 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcad03032
]
102983114 (RFC1)
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102983114 (RFC1)
DNA replication proteins [BR:
pcad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
102983114 (RFC1)
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
102983114 (RFC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
BRCT_2
AAA_22
AAA_30
AAA_16
nSTAND3
RuvB_N
AAA_18
Abhydrolase_8
Motif
Other DBs
NCBI-GeneID:
102983114
NCBI-ProteinID:
XP_023972601
Ensembl:
ENSPCTG00005016905
UniProt:
A0A2Y9S1X9
LinkDB
All DBs
Position
7:79673306..79750972
Genome browser
AA seq
1168 aa
AA seq
DB search
MDIRKFFGVIPSGKKVVSETAKKNEKTKSAEETIKAKKGIKEIKVNSSCKEDDFKQKQPS
KKKRIIYDSDSESEETVQVKNSKKRPEKLPLSSKPAKIRHQDPVTYISETDEEDDCVCKK
AASKSKENGGSPNSYLGASNMKKNEENTKTLNTKNKPLSPMKLTPTSVLDYFGTASVQRS
DKKMVSSKRKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPK
TKKARKDPGEREMFSSVQASLCRTEKPKYPHKEQFSDDRKNCSPKKQTKCESSKESQQHS
RSSTHKIGETSSPKNSPKLALLKKKEESYNKETEPIASKRKENAIELKETRTPKKIKSSP
AKKESISPEDSEKRRINYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESI
ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT
MPGKKSKYEIAAEAEMKKEKSKLERTPQKNNQGKRKISPTKKESESKKCKLTPKKESSIK
SVKKETSMFQRGLDFKEQVAEETNGDSWARNLADDSSENKVETLLWVDKYKPASLKTIIG
QQGDQSCANKLLRWLRNWHKSPSEDKRHAAKFGKFAGKDGGSSFKAALLSGPPGVGKTTT
ASLVCQLPYLWTMRGRGTRANQGSCIRMELGYSYVELNASDTRSKNSLKEIVAESLNNTS
IKGFYSSRAAHSVGTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHP
KIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL
SMWCARSKALTYDQAKADSHRAKKDIKLGPFDVARKVFVTGEETAHMSLVDKLDLFFHDY
SIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSISDGDLVDRQIRNKQNWSLLPTQA
IYASVLPGELMRGYMTQFPTFPSWLGKHSSMGKHDRIVQDLALHMSLRTHSSKRTVNVDY
LSHVRDALVQPLTSQGIEGVQDVVALMDTYYLMKEDFENIMEISSWGDRPSPFSKLDPKV
KAAFTRAYNKEVHLIPYSLQAVKTHRHSTGPALDSEYNEELNEDDSQSDEKDQDTLETDA
MIKKKTKSSKPSKSEKESRKGKGKSSKK
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgaaaattctttggggttataccaagtggaaagaaagttgtaagtgaaaca
gcaaagaagaatgagaaaacgaagtctgctgaagaaactataaaagcaaagaaaggaata
aaggaaatcaaggtaaatagttcttgtaaagaagatgacttcaagcagaagcaaccaagc
aagaaaaagaggatcatctatgattcagattcagaatcagaggagacagtgcaggtaaaa
aactccaaaaagcgaccagaaaaattgccgctgtcttctaaacctgctaaaattcgacac
caggatcctgttacgtacatttcagaaacagatgaagaagatgactgtgtgtgtaagaag
gcagcctctaaatcaaaagagaatggaggatctccaaatagttatcttggagcatcaaac
atgaaaaagaatgaagaaaacactaagacactaaacactaagaataaacctttgtcacca
atgaaacttacccccacatcagtgcttgattattttggaactgcaagtgtccaaagatcg
gataagaagatggtgtcaagcaaaagaaaagagccttcacaaaatgcagatgactccaga
ttaaatgatgaagccatcgccaagcaattgcaacttgatgaagatgcagagctagagaga
caactgcatgaagatgaagagtttgccagaacgttagccatgttggatgaagaacccaag
accaaaaaggctcggaaggacccaggagagagagagatgttttcatctgtacaagccagt
ttatgtagaacagaaaaacctaaatatcctcataaagaacaattttcagatgacagaaag
aactgcagtcctaagaagcaaactaaatgtgaaagttcaaaagaatctcagcaacattcc
aggtcatccactcataaaataggagaaacttcttctccaaaaaacagtcccaagctggca
cttttgaagaaaaaagaagaaagttataataaagaaacagagcctatcgcctcaaaaaga
aaagaaaatgccattgagttaaaagagacaagaactcctaagaaaatcaaaagttctcca
gctaaaaaagagtctataagtcctgaagattctgaaaagagacgcattaattatcaagct
tatcgaagctacttaaatcgagaaggtcccaaagctctgggctccaaagagataccaaag
ggagctgaaaattgcttggaaggccttacatttgtaatcacaggagtgctggaatccatt
gaacgagatgaggccaagtctctaattgagcgttatgggggaaaagtaacaggaaatgtc
agcaagaaaacaaactaccttgtcatgggtcgtgatagtggtcagtccaagagtgataag
gcagcagccttgggaacaaaaattattgatgaagatggcctattgaatctgattcgaact
atgccaggcaagaagtccaagtatgaaatagcagctgaagctgagatgaagaaagaaaaa
tccaaattggaaagaacaccccaaaaaaataaccaaggaaaaagaaaaattagtccaact
aagaaggaatcagaatctaaaaagtgcaaactgactcccaaaaaggaaagctctataaag
tcagtaaaaaaggagacaagtatgtttcagagaggcctggacttcaaggagcaggtggct
gaggaaacaaatggtgacagctgggctaggaatttggctgatgacagcagtgaaaacaaa
gtggaaactttgctctgggtggataaatataagccagcctcgctcaagaccataattgga
cagcaaggtgaccagagctgtgccaacaaactcctacgctggctccgaaactggcacaag
agtccatccgaagataagagacacgcagcaaagtttggtaaatttgctggcaaagatggc
ggctccagttttaaagctgcattgctctcaggccctcccggtgttggcaaaacaaccaca
gcttctctggtttgtcagctgccatatctctggacaatgagaggacgaggcactagagcc
aaccagggctcgtgtatcaggatggaattgggatatagctatgtggaactgaatgcaagt
gacactcggagtaagaacagtttgaaggagattgttgctgaatcgctgaataataccagc
atcaaaggcttttattcaagcagagcagcccattcagtaggcacgaaacatgctctcatc
atggatgaagtagatggcatggccggcaatgaggacaggggaggaattcaggaattaatt
ggcctgataaaacatacaaaaattcccattatttgtatgtgcaatgatagaaatcatccc
aagattcgatctttggttcattattgttttgatcttcgttttcaaagacctcgggttgaa
caaattaagggtgctatgatgtctattgcatttaaagagggcttaaagatcccccctcca
gctatgaatgaaataattttgggagccaatcaagatatcagacaggttttacacaatctg
agtatgtggtgtgcacgaagtaaagcactaacctatgaccaggctaaggctgattctcat
agagccaaaaaggatatcaaattgggcccatttgatgttgcccggaaagtgtttgtaact
ggagaggagactgctcatatgtcacttgtggacaaattagatctcttttttcatgattat
tcaatagcacccctctttgtccaggagaactacatacatgtgaagcctgtagccgcaggg
ggtgacatgaaaaagcacttgatgcttttaagcagagcagcagacagcatatctgatggt
gacctagtggaccgtcagatccggaataagcaaaactggagtcttctgcccacacaggcc
atttatgccagtgttcttcctggagagttaatgagggggtacatgacccagtttcctacc
ttcccaagttggttggggaagcactcatctatgggcaaacacgatcgtattgttcaggac
ctagcattgcatatgagtctcagaactcactccagcaaaaggactgtaaatgtggattat
ctgtcacatgtaagggatgcacttgtacagcccttgacctcacaagggatagaaggagta
caggatgttgttgctcttatggacacatattatttgatgaaagaagactttgagaatatc
atggaaattagcagctggggagacagacctagtcccttctccaagctggatcccaaggtg
aaagcagccttcacaagagcttacaataaggaagtccaccttattccgtattcactccag
gcagtaaagacacacagacacagcacaggcccagcgctggattctgaatacaatgaagag
ttaaatgaagatgactctcagtctgatgagaaagaccaggacactttggaaactgatgct
atgatcaagaaaaagacaaaatcttcaaagccttcaaaatcagaaaaagagtccagaaaa
ggaaaaggaaaaagttcaaagaaataa
DBGET
integrated database retrieval system
