Physeter catodon (sperm whale): 102984074
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Entry
102984074 CDS
T06011
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad04151
PI3K-Akt signaling pathway
pcad04510
Focal adhesion
pcad04512
ECM-receptor interaction
pcad04974
Protein digestion and absorption
pcad05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102984074 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102984074 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102984074 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102984074 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102984074 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcad00536
]
102984074 (COL2A1)
Glycosaminoglycan binding proteins [BR:
pcad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102984074 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
102984074
NCBI-ProteinID:
XP_007104431
Ensembl:
ENSPCTG00005011414
UniProt:
A0A2Y9EMB7
LinkDB
All DBs
Position
6:90630276..90661280
Genome browser
AA seq
1487 aa
AA seq
DB search
MVRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLTTASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMASGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVAGPMG
PRGPSGPPGKPGDDGEAGKAGKPGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGSDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGVGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPNGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGTRGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPRG
LPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPSGPPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPSGRDGAAGVKGDRGETGPVGAPGAPGAPGSPGPAG
PVGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPAGDQGTSGPAGPSGPRGPPGPIGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMDTG
ETCVYPRPASVPKKNWWGSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atggtccgcctcggggctccccagacgctggtgctgctgacgcttctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataacgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcaactgacctcaccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaagga
cctcctgggcctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac
cctggcccccctggccctcctggcccccctggcccccctggtcttggtggaaactttgct
gctcagatggcttcaggatttgatgagaaggctggtggcgcccagatgggagtaatgcag
ggaccaatgggccccatgggacctcggggacctccaggccctgctggtgctcccggacct
caaggatttcaaggcaaccctggtgaacctggggaacccggcgttgctggtcccatgggt
ccccgcggtccttctggcccccctggaaaacctggtgatgatggtgaagctggaaaggct
ggaaaacctggcgagagaggccttcctggtcctcagggtgctcgcggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagacggtgctaaggga
gaagctggtgctccgggtgtgaagggtgagagtggttccccaggagagaacggttctcca
ggcccaatgggtccccgtggcctgcctggtgagagaggacggaccggccctgctggcgct
gcgggtgctcggggcaacgatggccaacccggccccgcagggcctccgggtcccgtgggt
cctgctggcggtcctggcttccccggtgctcctggtgccaagggtgaagctggccccacc
ggtgctcgaggtcctgaaggtgcccaaggtcctcgcggtgaacctggtactcctgggtcc
cccgggccggctggtgcctctggtaaccctggatctgatgggattcctggagctaaagga
tctgctggtgcccctggcattgctggtgctcccggcttccccgggccccgtggtccaccc
ggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggtatt
gctggcttcaaaggtgaacaaggccccaagggagaaccgggccctgctggtccccaagga
gcccccggtcctgctggcgaagaaggcaaaagaggggcccgtggagagcctggtggtgtt
gggcccgctggtccccctggagagagaggtgctcctggcaaccgtgggttcccaggtcag
gatggtctggcaggtcccaagggagcccctggagagcgagggcccaatggccttgctggt
cccaagggagccaatggtgaccctggccgtcctggagaacctggcctgcctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
cctggtgaagatggtcgccctggacctccaggtccgcaggggactcgtgggcagcctggt
gtcatgggtttccctggccccaaaggcgccaatggtgagcctggcaaagctggtgagaaa
ggactgcctggtgctcccggtctgagaggtctccctggcaaagatggtgagacaggagct
gcagggccccctggacccgctggacctgccggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggcccgcccggtcccccaggtgaaggtggaaaacca
ggtgaccagggcgttcctggtgaagctggagctcccggcctcgtgggtcccaggggtgaa
cgaggtttcccaggggaacgtggctctcccgggtcccagggcctccaggggccccgcggc
ctccctggcactcctggcactgatggtcccaaaggcgcagctggcccagctggcccccct
ggggctcagggccctccaggtctgcaggggatgcccggtgagagaggagcagctggcatc
gctgggcccaagggagacaggggtgatgttggtgagaaaggccccgagggagcccccggg
aaggacggtggacgaggtctgactggccccattggcccccctggcccggccggtgccaac
ggtgagaagggagaagttggacctcctggtccttcaggaactgctggtgctcgaggtgcc
ccgggtgaacgtggagagactggaccccccgggcctgctggatttgccggtcctcctggt
gctgacggccagcccggtgccaaaggcgagcaaggagaggctggccagaaaggtgacgct
ggtgccccgggtcctcagggcccctctggagctcccgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggggccaccggattccccgga
gccgcaggccgcgtcggacccccaggttccaatggcaaccctggaccccccggcccccct
ggtccttctggaaaagatggtcccaaaggcgctcgaggagacagcggcccccctggccga
gctggtgaccctggcctccaaggtccttccggaccccctggcgagaagggagagcctgga
gatgacggtccttctggtcccgacggtcctccaggtccccagggtctggctggtcagagg
ggcatcgtgggtctgcctgggcagcgtggtgagcgtggattccccggcctgcccggcccg
tcgggtgagcctggcaagcagggagctcctggagcatctggagaccgaggtccccctggc
cccgtgggtcctcccggcctgactggtcctgcgggtgaacctggacgcgagggaagccct
ggtgctgacggcccctctggcagagacggtgcagctggagtcaagggtgatcgtggtgag
accggccccgtgggtgcccccggagccccaggggcccctggctctcctggccccgccggc
ccagtcggcaagcagggagaccgaggagaagctggtgcgcaaggccccatggggccctca
ggaccagctggagcccggggaatgccgggccctcaaggcccccgaggtgacaaaggagaa
acgggagaggctggcgagaggggactgaagggacaccgtggcttcactggtctgcagggt
ctgcccggcccccctggtcctgctggagaccaaggtacttctggtcctgccggtccttct
ggccccagaggtcctcctggccccatcggcccctctggcaaagatggcgctaatggaatc
cccggccccattggacctcctggaccccgtggacgttcaggcgaaactggccctgctggt
cctcctggaaatcctggaccccctggccctccaggtccccctggccctggcattgacatg
tccgcctttgctggcctaggccagagagagaagggccccgaccccctgcagtacatgcgg
gccgatgaggcagccggcaacctgagacagcacgacgccgaggtggatgccacactcaag
tccctcaacaaccagatcgagagcatccgcagccccgagggatcccgcaagaaccccgct
cgcacctgccgggacctgaaactctgccaccctgagtggaagagcggagattactggatc
gacccgaaccagggctgcaccctggacgccatgaaggttttctgcaacatggacactggc
gagacctgcgtctacccccgcccagccagcgttcccaagaagaattggtggggcagcaag
agcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccacttcagc
tatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctgcgcctg
ctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagccgccggcaacctcaagaaggccctgctcatccagggctccaacgacgtggag
atccgggctgagggcaacagcaggttcacgtatactgttctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactatgatcgagtaccggtcgcagaagacctcacgcctc
cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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