Physeter macrocephalus (sperm whale): 102984311
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Entry
102984311 CDS
T06011
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad04820
Cytoskeleton in muscle cells
pcad04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102984311 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102984311 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcad00536
]
102984311 (COL11A1)
Glycosaminoglycan binding proteins [BR:
pcad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102984311 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
102984311
NCBI-ProteinID:
XP_007113664
Ensembl:
ENSPCTG00005000887
UniProt:
A0A2Y9F238
LinkDB
All DBs
Position
4:92951609..93150514
Genome browser
AA seq
1805 aa
AA seq
DB search
MERWSSRWKTKRWLWDFTITTLALTFLFQAREVRGAAPVDVLKALDFHSSPEGISKTMGF
CTNRKNSKGSDTAYRVSKQAQLSAPTKQLFSGGTFPEDFSILFTVKPKKGIQSFLLSIYN
EHGIQQIGVEVGRSPVFLYEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKMKTTKPLDRSERAIVDTSGITVFGTRILDEEVFEGDIQQFLIIGDPKAAYDYCEHYS
PDCDSSASKAAQAQEPQIDEYAPEDIMEYDYEYGEAEYKEAESITETPTVTEETIAQTEA
NIVDDFEEYNYGTESYQTEAPRRVSGPNEPNPVEEVFTEEYLTGEDYDSQRKNSEDMLYE
NKEIDGRDSELLVDGDLGEYDFYEYKEYEDKPTSPTNEEFGPGVPAETDITETSINGHGA
YGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGRPGLPG
ADGLPGPPGTMLVLPFRYGGDGSKGPVISAQEAQAQAILQQARIALRGPPGPMGLTGRPG
PVGGPGSSGAKGERGDPGPQGPRGVQGPPGPIGKPGKRGRPGADGGRGMPGEPGAKGDRG
FDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPG
PTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG
LGGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKG
EDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPAGQAGEKGKLGVPG
LPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPG
PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG
PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDG
PAGLRGFPGERGLSGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG
PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKG
DKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQG
LPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAG
NPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPSGDDGPKGNPGPVGFPGDPGPPG
EPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG
EAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPG
LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGISGPAGPIGPPG
PPGLPGPQGPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTESM
QSDASDNILDYTDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGE
YWIDPNQGCSGDSFKVYCNFTSGGETCIYPDRKSEGVRISSWPKEKPRSWFSEFKRGKLL
SYLDVAGNSINMVQMTFLKLLTASARQNFTYSCHQSAAWYDVSSGSYDKALRFLGSNDEE
MSHDNNPYIKALYDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDFGDLNQKFGFEVGP
VCFLG
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtggtcctctaggtggaaaacgaaacggtggctctgggatttcaccataaca
actctcgcactgactttcctcttccaggctagagaggtcagaggagctgctccagttgat
gtactaaaagctctagattttcacagttctccagagggaatatcaaaaacaatgggcttt
tgcacaaacagaaagaattcaaaaggttcagatactgcttacagagtttcaaagcaagca
caactcagtgccccaacaaaacagttattttcaggaggaacttttccagaggatttttca
atattatttacagtaaaacccaaaaaaggaattcagtctttccttttatctatatataat
gagcatggtattcagcaaatcggtgtggaggttgggagatcacctgttttcctgtatgaa
gaccacactggaaaacctgccccagaagactaccccctctttagaactgttaacatcgca
gatggaaagtggcaccgggtagcaatcagcgtggagaagaaaactgtgacaatgattgtt
gattgtaagatgaaaaccacaaaaccacttgacagaagtgagagagcaatcgttgacacc
agtggaattacagtttttggaacaagaattttggatgaagaagtttttgagggggacatc
cagcagttcttgatcataggtgaccccaaagcagcgtatgactactgtgagcattacagt
ccagactgtgattcctcagcatccaaggctgctcaggctcaggaaccccagatcgatgag
tatgcacctgaggatataatggaatatgactatgagtatggggaagcagaatataaagag
gctgaaagtataacagagactcccactgtaactgaggagacaatagcacaaaccgaggca
aatattgttgatgattttgaagaatacaactatggaacagaaagttaccaaacagaagct
cctaggcgtgtatctggaccaaatgagccaaatccggttgaagaagtatttactgaagaa
tatctaactggagaggattatgattcccagaggaaaaattctgaggatatgctatatgaa
aacaaagaaatagacggcagggactctgaacttctggtagatggagatttaggcgaatat
gatttttatgaatataaagaatatgaagataaaccaacaagccccactaatgaagaattt
ggtccaggtgttccagcagaaacagatatcacagaaacaagtataaatggccatggtgca
tacggagaaaaaggacagaaaggagaaccagcagtagttgaacctggcatgcttattgaa
ggaccaccagggccagcaggacctgcgggtcttatgggtcctccaggtctacagggcccc
actggaccccctggtgaccctggcgagaggggtcccccaggacgtcctggtctaccaggg
gctgatggtttaccgggtcctcctggtaccatgttagtgttaccgtttcgttatggtggc
gatggttccaaaggaccagtcatctctgctcaggaagctcaggcccaggccattcttcag
caggctcggattgctctgagaggtccacctggcccaatgggtctaactggaagaccgggt
cctgtgggggggcctggttcctctggggccaaaggtgagaggggtgatccaggtcctcag
ggtcctcgtggtgtccaaggtcctcctggtccaataggaaaacctggaaaaaggggtcgt
ccgggtgctgatggaggaagaggaatgccaggagaacccggggccaagggggatcgagga
tttgatggacttccaggtctgccaggtgacaagggtcacaggggtgaacgaggtccccaa
ggtcctcctggtcctcctggtgaagatggaatgcggggagaagatggagaaataggacca
aggggtcttccaggtgaagctggtccacgaggtttgctaggaccaaggggaactccagga
cctacaggacagcctggtatcgcaggtgtggatggccccccaggaccaaaagggaacatg
ggtccccaaggggagcctggacctccaggtcagcaagggaatccaggacctcaaggtctt
cctggtccacaaggtccaattggtcctcccggtgaaaaaggaccacaaggaaaaccaggg
ctcggaggacttcctggtgctgatgggcctcccggtcatcctggaaaagaaggccagtct
ggagaaaagggttctctgggtcctcctggtccacagggtcccattggctaccctggtccc
cgaggagtaaagggagcagatggtgtcagaggtctcaagggctctaaaggtgaaaaggga
gaagatggttttccaggattcaaaggggacatgggtcttaaaggtgacagaggggaagtt
ggtcaagtaggtccaagaggagaagatggccctgaaggccccaaaggtcgagcaggtcca
accggagaccccggtcctgctggtcaagcaggagagaaggggaaacttggtgttccagga
ttaccaggatatccaggaagacaaggtccaaagggttccactggatttcctgggtttcca
ggtgccaatggagagaaaggtgcccggggtgtagctggcaaaccaggccctcggggtcag
cgtggtccaacgggtcctcgaggttcaagaggtgcgagaggtcccactgggaaacctggt
ccaaagggcacttcaggcggtgatggtcctcctggccctcctggtgaaagaggtcctcaa
ggacctcaaggtccagttggattccctggaccaaaaggccctcctggaccacctggaaag
gatggcctgccaggacaccctgggcaacgtggagagactgggtttcaaggcaagaccggc
cctcctgggccagggggtgttgttggaccacagggaccaactggtgagactggtcccata
ggtgaacgtggacatcctggtcctcctggccctcctggggagcaaggtcttcccggtgct
gcaggaaaagaaggtgcaaagggtgacccaggtcctcaaggtgtctcagggaaagacgga
ccagcaggactacgtggtttcccaggtgaaagaggactttctggagctcagggtgcacct
ggactgaaaggaggagaaggtccccagggcccaccaggtccagttggctcaccaggagaa
cgtgggtcagcaggaacagctggcccaattggtttgccagggcgaccaggacctcagggt
cctcctggtccagctggagagaaaggtgctcctggagaaaaaggtccccaaggccctgca
gggagagatggagtacaaggccccgtgggtctcccagggcctgctgggcctgctggctcc
ccaggagaggatggagacaagggtgaaatcggtgaaccaggacaaaaaggcagcaagggt
gacaaaggagaaaatggtcctcctggtcccccaggtcttcaaggtccagttggtgcccct
ggaattgctggaggtgatggtgagccaggtcccagaggtcagcaggggatgttcggacaa
aaaggtgatgaaggtgccagaggtttcccaggacctccaggtcccataggtcttcagggt
ctgccaggcccacctggtgaaaaaggtgaaaatggggatgttggtcccatgggtccacct
ggtcctccaggccccagaggtcctcaaggtcccaatggagctgatggaccacaaggacca
ccgggatccattggttcagttggtggtgttggagaaaagggtgagcctggagaagcaggg
aacccagggcctcctggggaagcaggcacaggcggtcccaaaggagaaagaggagagaaa
ggagaagctggtccacctggtgctgctggacctcctggtgctaaaggaccatcaggtgac
gatggccctaagggtaacccgggtcctgttggttttcctggagatcctggtccccctggg
gaacctggccccgcaggtcaggatggtgttggtggtgacaagggtgaagatggagatcct
ggacaaccgggtcctcctggcccatctggtgaggctggcccaccaggtcctcctggaaag
agaggtcctcctggagctgcaggtgcagagggaagacaaggtgaaaaaggtgctaaggga
gaagcaggagctgaaggtccgccaggaaaaactggcccagttggtcctcagggacctgcc
ggaaagcctggtccagagggtcttcggggcatccctggccctgtgggagaacaaggtctc
cctggagctgcaggccaagatgggccacctggtcctatgggacctcctggcttacctggt
ctcaaaggtgaccctggctccaagggtgagaagggacatcctggtttaattggcctgatt
ggtcctccaggagaacaaggtgaaaagggtgacagaggactccctggaactcaaggctct
ccaggagcaaaaggggatggaggtatttcaggccctgctggtcccataggtccacctggt
cctccaggcttaccaggtcctcaaggtccaaagggtaccaaaggctctactggacctgct
ggccagaagggtgacagtggtcttccagggcctcctgggcctccgggtccaccgggtgaa
gtcatacagcctttaccaatcttgtcacccaaaaaaacaagaagacatacagaaagcatg
cagtcagatgcaagtgataatattctggattacactgatggaatggaggaaatatttggt
tccctcaattccttgaaacaagacattgagcatatgaagtttccaatgggtacacagacc
aacccagcccgaacttgcaaagatctgcaactcagccatcctgacttcccagatggtgaa
tattggattgatcctaaccagggttgctcaggagattccttcaaagtttactgtaatttc
acgtctggtggtgagacttgcatttatccagacagaaagtcagagggcgtaagaatttca
tcatggccaaaggagaaaccaagaagctggtttagtgaatttaagagaggaaaactgctt
tcatatttagatgtggcaggcaattccattaatatggtgcaaatgacattcctgaaactg
ctgactgcttctgcgcggcaaaatttcacctacagctgtcatcagtcagcagcctggtac
gatgtgtcatcaggaagctatgacaaagcacttcggttcctgggatcgaatgatgaggag
atgtcccatgacaacaacccttacatcaaagccttatatgatggctgtgcgtccagaaaa
ggctatgaaaagactgtgattgaaatcaatacaccgaaaattgaccaagtacctatcgtt
gatgtaatgatcaatgactttggtgatctgaatcagaagtttggatttgaagttggtcct
gtttgttttcttggctaa
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integrated database retrieval system
