KEGG   Physeter macrocephalus (sperm whale): 102984755
Entry
102984755         CDS       T06011                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X2
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
pcad  Physeter macrocephalus (sperm whale)
Pathway
pcad04140  Autophagy - animal
pcad04148  Efferocytosis
pcad05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    102984755 (VPS41)
   04148 Efferocytosis
    102984755 (VPS41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    102984755 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pcad04131]
    102984755 (VPS41)
Membrane trafficking [BR:pcad04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    102984755 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin WD40_CDC20-Fz WD40_Prp19 ANAPC4_WD40 zf_RING_Vps8_fungal Beta-prop_HPS5 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_RIG_2nd Vps39_1 TPR_PEP5_VPS11 zf_RING_Vps8 Frtz zf-RING_5 RIG-I_C Beta-prop_IFT140_2nd zf-rbx1 zf-RING_2 zf-RING_11
Other DBs
NCBI-GeneID: 102984755
NCBI-ProteinID: XP_007127432
Ensembl: ENSPCTG00005004357
UniProt: A0A2Y9FNB1
LinkDB
Position
5:complement(95022730..95233294)
AA seq 854 aa
MAEAEEQETESLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
GTHYGKVYLLDVQGNITQKFDISPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH
ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMSRWKSSILHEGEGNIRSVKWR
GHLVAWANNMGVKIFDITSKQRITNVPRDDISLRPDMYPCSLCWKDNVTLVIGWGTSVKI
CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEVSEKTEREYCA
RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVEKGEYDVAARKCQK
ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
REWPGDLYNNSVIVQAVRDHLKKDSQNRTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
LFKRDHHKGQRYHEKQISLYAEFDRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLL
SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
KGILVDEENICESCLSPILPSDAAKPFSMVVFHCRHMFHKECLPMTSMNSPVQFCNICSA
KHRGPGSAILEMKK
NT seq 2565 nt   +upstreamnt  +downstreamnt
atggcagaagcggaggagcaggaaaccgagtctcttgaagaatctacagatgagtctgag
gaagaagagagtgaagaggagcccaaactgaagtatgaaaggctctccaatggggtaact
gaaatccttcagaaggatgctgctagctgcatgacagtccacgacaagtttttggcactg
ggcacacattatggcaaggtttatttactggatgtccaggggaacatcactcagaagttt
gatataagtcctgtgaagataaatcagattagcctggatgaaagtggcgaacacatgggc
gtgtgttcagaggacggcaaggtgcaggtgtttggactgtattctggagaagaatttcat
gagacttttgactgtcccattaaaatcattgccgtgcatcctcatttcgtgagatccagc
tgcaagcagtttgtgaccggagggaagaagttgctgctgtttgaacggtcttggatgagc
aggtggaagtcttcaattctgcacgaaggagaagggaacataaggagtgtgaagtggagg
ggccatctggttgcctgggccaacaacatgggtgtgaagatttttgacatcacctcaaag
caaagaatcaccaatgtaccccgggatgatataagtcttcgccccgatatgtatccctgt
agcctttgctggaaggacaatgtgacactggtcattggctggggcacctccgtcaagata
tgctcggtgaaggaacggcatgccagtgaaatgagggatttgccaagccgatacgttgaa
atagtgtctcagtttgaaactgaattctacatcagcggactggcacctctctgtgatcag
cttgttgtactttcctatgtaaaggaggtttccgaaaaaacggaaagagaatactgcgcc
aggcccagactggatatcatccagccgctttccgagacttgtgaagagatctcttctgat
gctctgactgtgagaggctttcaggaaaatgaatgtagagattatcacttagaatattcg
gaaggggagtcactcttttacattgtgagtccaagagatgttgtcgtagccaaggaacga
gaccaagatgaccacatcgactggctccttgaaaagaagaaatatgaagaagctctgatg
gcagctgaaattagtcaaaagaacattaaaagacataaaattctggacatcggcttggca
tatataaaccacctggtggagaaaggagagtacgacgtagcggcgcgcaaatgccagaaa
attcttgggaaaaatgcagcactctgggaatatgaagtttataaatttaaagaaattgga
cagcttaaggctattagtccttatttgccaagaggggatccagttctgaaaccactcatc
tatgaaatgatcttgcatgaatttttggaaagtgattatgagggttttgccacactgatc
cgagaatggccaggagacctgtacaacaattcagtaatagttcaagcagttcgggatcac
ctgaagaaagacagtcagaacagaaccttacttaaaaccctggcagaattgtacacctat
gacaaaaactatggcaatgctctggaaatatacttaacgttaagacataaggatgttttc
cagttgatccacaagcataatcttttcagttctatcaaggataaaattgttttattaatg
gattttgattccgagaaagctgttgacatgcttctggacaacgaagataaaatttcaatt
aaaaaggtagtggaagaattagaagacagaccagagttgcagcacgtgtatctgcataag
cttttcaaaagagaccatcataaggggcagcgctaccacgagaagcagatcagcctttat
gctgaattcgaccgacccaacttgcttccatttctccgagacagtatccactgccccctt
gaaaaggctcttgagatctgtcaacagagaaactttgtagaagagacagtttatcttctg
agccgaatgggtaatagccgaagtgccctgaagatgatcatggaggaactgcatgacgtt
gataaagcgattgaatttgccaaggagcaggatgacggggaactctgggaagatctgatt
ttatattccatcgacaaaccaccctttatcaccggcttgttaaacaatatcggcacgcat
gttgacccaattctactgattcaccgtattaaggaaggaatggagattcctaatttgaga
gactccttggttaaaattctgcaagactacaatctgcaaattctgcttcgcgaaggctgc
aagaagattcttgtagctgactctttgtccttactaaagaagatgcaccgaactcaaatg
aaaggcattctggttgatgaggagaacatctgtgagtcctgtctttcccccattcttcca
tcagatgcagctaagcccttcagcatggtggtcttccactgccgccacatgttccacaag
gagtgcctgcctatgaccagcatgaactctcctgtgcagttctgtaacatctgcagtgct
aagcaccggggaccaggaagtgccattttggagatgaaaaaatag

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